Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0297
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|...    30   0.29 
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    29   0.67 
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   4.7  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   6.2  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    25   8.2  

>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 109

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 589 MVFAGLKKANERADLIAYLKSAT 521
           M FAG KK  +R ++I YLK AT
Sbjct: 85  MAFAGFKKPADRNNVITYLKKAT 107


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 585 YLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGIYFL 451
           +L   +R  S+++ +  SNLL  N  +++N   SIF +    Y L
Sbjct: 326 FLQSKKRPQSIMSYMGHSNLLERNLALMKNENGSIFSSAGDDYVL 370


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 537 ISNLLPSNFKVIENSIRSIFHNISGIYFL 451
           +S+L  + F+ I+N  +SI++   GI+F+
Sbjct: 165 LSSLAVNEFRTIQNISKSIWYTRLGIFFI 193


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 214 FCEKTITKLTRSINNLTFNHSQHCQESINHTIHYVPGTY 330
           F + T+  L      L   HS HC+ +    + ++PGT+
Sbjct: 657 FSKDTLFILNVESPCLMLQHSYHCKPNSKLNVFWMPGTH 695


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 363 TQSFAVVVCEYICTWYIMYCVIYTLLTML 277
           T+ F V++  Y  +W+  YC I  L + L
Sbjct: 36  TRVFLVLISLYFMSWHPNYCTIVYLYSSL 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,676
Number of Sequences: 5004
Number of extensions: 35595
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)