Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0297
(589 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57825| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_27940| Best HMM Match : IncA (HMM E-Value=0.41) 28 6.5
SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6) 28 6.5
SB_10369| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_5747| Best HMM Match : NAF1 (HMM E-Value=7.3) 28 6.5
SB_13929| Best HMM Match : VKOR (HMM E-Value=0.65) 28 6.5
SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_10191| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_58630| Best HMM Match : IncA (HMM E-Value=0.5) 27 8.6
SB_42842| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_38773| Best HMM Match : Flagellin_IN (HMM E-Value=9.9) 27 8.6
SB_26128| Best HMM Match : DUF725 (HMM E-Value=7.9) 27 8.6
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4) 27 8.6
SB_10025| Best HMM Match : GLYCAM-1 (HMM E-Value=1.3) 27 8.6
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13) 27 8.6
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_57825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 588 WYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 460
WY L+ +Q++ ++ LP LP+ E+ + +I H S I
Sbjct: 38 WYNLEREQQITTISSLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_27940| Best HMM Match : IncA (HMM E-Value=0.41)
Length = 418
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 588 WYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 460
WY L+ +Q++ ++ LP LP+ E+ + +I H S I
Sbjct: 38 WYNLEREQQITTISSLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6)
Length = 329
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 588 WYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 460
WY L+ +Q++ ++ LP LP+ E+ + +I H S I
Sbjct: 38 WYNLEREQQITTISSLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_10369| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 588 WYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 460
WY L+ +Q++ ++ LP LP+ E+ + +I H S I
Sbjct: 38 WYNLEREQQITTISSLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_5747| Best HMM Match : NAF1 (HMM E-Value=7.3)
Length = 268
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 588 WYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 460
WY L+ +Q++ ++ LP LP+ E+ + +I H S I
Sbjct: 38 WYNLEREQQITTISSLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_13929| Best HMM Match : VKOR (HMM E-Value=0.65)
Length = 498
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 588 WYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 460
WY L+ +Q++ ++ LP LP+ E+ + +I H S I
Sbjct: 402 WYNLEREQQITTISSLPPIATLPAGHHTAESIVETINHAKSQI 444
>SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 588 WYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 460
WY L+ +Q++ ++ LP LP+ E+ + +I H S I
Sbjct: 38 WYNLEREQQITTISSLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_10191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 588 WYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 460
WY L+ +Q++ ++ LP LP+ E+ + +I H S I
Sbjct: 38 WYNLEREQQITTISSLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_58630| Best HMM Match : IncA (HMM E-Value=0.5)
Length = 307
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 588 WYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 460
WY L+ +Q++ + LP LP+ E+ + +I H S I
Sbjct: 5 WYNLEREQQITTIASLPPIATLPAGHHTAESIVETINHAKSQI 47
>SB_42842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 588 WYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 460
WY L+ +Q++ + LP LP+ E+ + +I H S I
Sbjct: 38 WYNLEREQQITTIASLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_38773| Best HMM Match : Flagellin_IN (HMM E-Value=9.9)
Length = 135
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 588 WYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 460
WY L+ +Q++ + LP LP+ E+ + +I H S I
Sbjct: 38 WYNLEREQQITTIASLPPIATLPAGHHTAESIVETINHAKSQI 80
>SB_26128| Best HMM Match : DUF725 (HMM E-Value=7.9)
Length = 213
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 366 TTQSFAVVVCEYICTWYIMYCVIYTLLT--ML*VIKC 262
+T+S A V C C M C+++T++ +L VI C
Sbjct: 8 STESLAEVACSVTCCCIWMVCMVFTIVPGFLLVVIGC 44
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +1
Query: 214 FCEKTITKLTRSINNLTFNHSQHCQESINHTIHYVPGTYVFTNNNCK*LCC 366
FC+ T+ + +S N F S ++ ++ HY G +F + +CC
Sbjct: 600 FCKGTVIRAAKSYN---FCGSIAAKKFVSDVAHYTTGATIFVAAKVEKVCC 647
>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
Length = 585
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 588 WYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 460
WY L+ +Q++ + LP LP+ E+ + +I H S I
Sbjct: 283 WYNLEREQQITTIASLPPIATLPAGHHTAESIVETINHAKSQI 325
>SB_10025| Best HMM Match : GLYCAM-1 (HMM E-Value=1.3)
Length = 517
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 588 WYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGI 460
WY L+ +Q++ + LP LP+ E+ + +I H S I
Sbjct: 330 WYNLEREQQITTIASLPPIATLPAGHHTAESIVETINHAKSQI 372
>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
Length = 417
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -2
Query: 588 WYLLDSRRQMSVLTLLPISNLLPSNFKVIENSIRSIFH 475
WY L+ Q++ + LP LP+ E+++ +I H
Sbjct: 38 WYNLEREHQITTIASLPPIVTLPAGHHTAESTVETINH 75
>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -3
Query: 53 RAEFLQPGDPLV 18
R EFLQPGDPLV
Sbjct: 31 RIEFLQPGDPLV 42
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,777,696
Number of Sequences: 59808
Number of extensions: 255551
Number of successful extensions: 773
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -