Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0296
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   0.98 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.0  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   5.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   6.9  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 217 YLIVNNQIQM*ILIIFTLSLRF-ILVIIYWY 128
           YL   N+I++ +  IFT S    +++IIY+Y
Sbjct: 201 YLTDTNEIRIFVATIFTFSYCIPMILIIYYY 231


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +1

Query: 478 FTCERELHVPDCAGPSLQGFDWIPEYYEFTVILTDLLYY 594
           F C    H         Q  D+ P+  E+  IL+  LYY
Sbjct: 280 FICWAPFHTQRLLYVYAQESDYYPDLNEWLYILSGCLYY 318


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 515 AQSGT*SSLSHVKQHTTQLQQHLIFHFPHRNFIKTVREHLKP 390
           A + T ++   +KQ T Q   HL  H  H      V++H +P
Sbjct: 122 AATATTTATGLIKQETLQRHHHLQNHHHHLQ-STAVQDHHRP 162


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 209 CK*SNTDVDSYHIYTKSSFYFSNYILVYVYLN 114
           C   NTD   Y   + SSFY    I+V++Y N
Sbjct: 336 CLFYNTDFIIYS--SLSSFYIPCIIMVFLYYN 365


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 224 ANIFNCK*SNTDVDSYHIYTKSSFYFSNYI 135
           +N +N    N   ++Y+ Y K  +Y  NYI
Sbjct: 86  SNNYNYSNYNNYNNNYNNYNKKLYYNINYI 115


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 340 ICTVNSSKSNLRIKYSYNLLRCV 272
           +CTV  S  N+ + ++   ++CV
Sbjct: 126 VCTVEVSSENMTVTFANLGIQCV 148


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 340 ICTVNSSKSNLRIKYSYNLLRCV 272
           +CTV  S  N+ + ++   ++CV
Sbjct: 126 VCTVEVSSENMTVTFANLGIQCV 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,604
Number of Sequences: 438
Number of extensions: 3320
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)