Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0295
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    25   7.3  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   7.3  

>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 121 KNLKKETIIFCNILCTTILLQKSCDRCLE 35
           KNL  ET++F N     IL  +  DRC++
Sbjct: 200 KNLPSETVLFAN---GNILHAQDIDRCIK 225


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 115 LKKETIIFCNILCTTILLQKSCDRCL 38
           LK++   + N+L T I LQK C + L
Sbjct: 170 LKEQMRFYDNVLDTRIRLQKGCSQLL 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,638
Number of Sequences: 5004
Number of extensions: 37309
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)