Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0295
         (458 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0455 + 9517802-9518121,9518177-9518423,9518517-9518804           27   5.5  
09_02_0409 - 8656136-8656318,8656469-8656609,8658608-8658756,865...    27   5.5  
01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008     27   9.6  

>09_02_0455 + 9517802-9518121,9518177-9518423,9518517-9518804
          Length = 284

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 106 ETIIFCNILCTTILLQKSC 50
           E ++FCN +C  I + KSC
Sbjct: 264 EVVMFCNKICILIFVAKSC 282


>09_02_0409 -
           8656136-8656318,8656469-8656609,8658608-8658756,
           8658830-8658987,8659326-8659409,8659654-8659787,
           8661255-8661389,8662159-8662551
          Length = 458

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 183 LIIYNPKKGLIDIRLMQRGNRVAVFTATKNGQLL 284
           L I+ P+KG+I+I  M+ G R+      K  ++L
Sbjct: 387 LAIHAPRKGIIEIWQMRTGARLLTIPCPKGSRIL 420


>01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008
          Length = 460

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
 Frame = +3

Query: 195 NPKKGLIDIRLMQRGNRV-----AVFTATKNGQLLYNTCGLVGADKNYTQKKLNLPEFQC 359
           NP  G +     +R   V     A         +L  TCG + AD+   +        Q 
Sbjct: 278 NPYLGFVYTSFQERATAVSHGNTARLARAHGDDVLARTCGTIAADEKRHETAYGRIVEQL 337

Query: 360 VLLDPDGKL 386
           + LDPDG +
Sbjct: 338 LRLDPDGAM 346


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,473,886
Number of Sequences: 37544
Number of extensions: 185257
Number of successful extensions: 380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)