Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0295
         (458 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50016| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_17718| Best HMM Match : Ribosomal_L2 (HMM E-Value=7.3)              28   4.3  
SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   7.5  

>SB_50016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2065

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +3

Query: 159 KEIRRAIFLIIYNPKKGLIDIRLMQRGNRVAVFTAT---KNGQLLYNTCG 299
           K +   IF ++  P+ G+I    ++ G  V+VFT T   K+  ++Y   G
Sbjct: 225 KPMEELIFFVVTPPEHGIIKDTRLETGRNVSVFTLTQLQKSASIVYQHDG 274


>SB_17718| Best HMM Match : Ribosomal_L2 (HMM E-Value=7.3)
          Length = 112

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 192 YNPKKGLIDIRLMQRGNRVAVFTAT---KNGQLLYN 290
           Y PK GL++ ++   G R   F  T   KNGQ+ +N
Sbjct: 16  YGPKNGLVNRKITFHGRRNRRFHVTRRVKNGQISFN 51


>SB_11108| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1266

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 249 AVFTATKNGQLLYNTCGLVGADKNYT--QKKLNLPEFQCVLLDPDGKLKKFSIPFFYAL 419
           ++FT      +L NT G+  +D  Y+     + L   Q  LL+PDG +    I  F  L
Sbjct: 347 SLFTLASLLGILTNTVGIGLSDALYSIFDAYMALGRMQAFLLEPDGNISATQIHLFQQL 405


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,815,014
Number of Sequences: 59808
Number of extensions: 241282
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)