Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0295
         (458 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC146760-1|AAI46761.1| 1393|Homo sapiens RAB3 GTPase activating ...    65   1e-10
AL445435-3|CAI15808.1| 1393|Homo sapiens rab3 GTPase-activating ...    65   1e-10
AF255648-1|AAG44636.1| 1393|Homo sapiens rGAP-iso protein.             65   1e-10
AF004828-1|AAC35881.1| 1393|Homo sapiens rab3-GAP regulatory dom...    65   1e-10
AB020646-1|BAA74862.2| 1393|Homo sapiens KIAA0839 protein protein.     65   1e-10

>BC146760-1|AAI46761.1| 1393|Homo sapiens RAB3 GTPase activating
           protein subunit 2 (non-catalytic) protein.
          Length = 1393

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
 Frame = +3

Query: 168 RRAIFLIIYNPKKGLIDIRLMQRGNRVAVFTATKNGQLLYNTCGLVGADKNYTQKKLNLP 347
           R A FL+IY P++G++++   Q+G RV  F   K+ +LLY    ++G + N T +     
Sbjct: 460 RVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGYKIMGLN-NVTSQSWQPQ 518

Query: 348 EFQCVLLDP-DGKLKKFSIPFFYALDGVHSERSKDLN 455
            +Q  L+DP  G +K  ++PF  AL    SER+KD++
Sbjct: 519 TYQICLVDPVSGSVKTVNVPFHLALSDKKSERAKDMH 555


>AL445435-3|CAI15808.1| 1393|Homo sapiens rab3 GTPase-activating
           protein, non-catalytic subunit (RAB3-GAP150) protein.
          Length = 1393

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
 Frame = +3

Query: 168 RRAIFLIIYNPKKGLIDIRLMQRGNRVAVFTATKNGQLLYNTCGLVGADKNYTQKKLNLP 347
           R A FL+IY P++G++++   Q+G RV  F   K+ +LLY    ++G + N T +     
Sbjct: 460 RVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGYKIMGLN-NVTSQSWQPQ 518

Query: 348 EFQCVLLDP-DGKLKKFSIPFFYALDGVHSERSKDLN 455
            +Q  L+DP  G +K  ++PF  AL    SER+KD++
Sbjct: 519 TYQICLVDPVSGSVKTVNVPFHLALSDKKSERAKDMH 555


>AF255648-1|AAG44636.1| 1393|Homo sapiens rGAP-iso protein.
          Length = 1393

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
 Frame = +3

Query: 168 RRAIFLIIYNPKKGLIDIRLMQRGNRVAVFTATKNGQLLYNTCGLVGADKNYTQKKLNLP 347
           R A FL+IY P++G++++   Q+G RV  F   K+ +LLY    ++G + N T +     
Sbjct: 460 RVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGYKIMGLN-NVTSQSWQPQ 518

Query: 348 EFQCVLLDP-DGKLKKFSIPFFYALDGVHSERSKDLN 455
            +Q  L+DP  G +K  ++PF  AL    SER+KD++
Sbjct: 519 TYQICLVDPVSGSVKTVNVPFHLALSDKKSERAKDMH 555


>AF004828-1|AAC35881.1| 1393|Homo sapiens rab3-GAP regulatory domain
           protein.
          Length = 1393

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
 Frame = +3

Query: 168 RRAIFLIIYNPKKGLIDIRLMQRGNRVAVFTATKNGQLLYNTCGLVGADKNYTQKKLNLP 347
           R A FL+IY P++G++++   Q+G RV  F   K+ +LLY    ++G + N T +     
Sbjct: 460 RVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGYKIMGLN-NVTSQSWQPQ 518

Query: 348 EFQCVLLDP-DGKLKKFSIPFFYALDGVHSERSKDLN 455
            +Q  L+DP  G +K  ++PF  AL    SER+KD++
Sbjct: 519 TYQICLVDPVSGSVKTVNVPFHLALSDKKSERAKDMH 555


>AB020646-1|BAA74862.2| 1393|Homo sapiens KIAA0839 protein protein.
          Length = 1393

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
 Frame = +3

Query: 168 RRAIFLIIYNPKKGLIDIRLMQRGNRVAVFTATKNGQLLYNTCGLVGADKNYTQKKLNLP 347
           R A FL+IY P++G++++   Q+G RV  F   K+ +LLY    ++G + N T +     
Sbjct: 460 RVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLLYPGYKIMGLN-NVTSQSWQPQ 518

Query: 348 EFQCVLLDP-DGKLKKFSIPFFYALDGVHSERSKDLN 455
            +Q  L+DP  G +K  ++PF  AL    SER+KD++
Sbjct: 519 TYQICLVDPVSGSVKTVNVPFHLALSDKKSERAKDMH 555


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,427,177
Number of Sequences: 237096
Number of extensions: 1119159
Number of successful extensions: 1429
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)