Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0295
         (458 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32620.1 68415.m03982 cellulose synthase family protein simil...    29   1.5  
At3g14910.1 68416.m01885 expressed protein                             28   2.6  
At1g61500.1 68414.m06929 S-locus protein kinase, putative simila...    27   4.6  
At5g50630.1 68418.m06272 nodulin family protein similar to nodul...    27   6.1  
At5g50520.1 68418.m06257 nodulin family protein similar to nodul...    27   6.1  
At1g61460.1 68414.m06925 S-locus protein kinase, putative contai...    27   8.1  
At1g61420.1 68414.m06921 S-locus lectin protein kinase family pr...    27   8.1  

>At2g32620.1 68415.m03982 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -4
           [gi:9622880], -9 [gi:9622890]
          Length = 757

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 179 NCPSYFFEQKII-EVSCYLIQKSEKRNH-HFLQYFMHYYFVTEIMRPVFRDHL 27
           +C  Y  E  ++ +  C  +QKS+ +NH  F+Q+   +Y    I   V + ++
Sbjct: 294 DCDMYANEADVVRQAMCIFLQKSQNQNHCAFVQFPQEFYDSNTIKLTVIKSYM 346


>At3g14910.1 68416.m01885 expressed protein
          Length = 455

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 183 LIIYNPKKGLIDIRLMQRGNRVAVFTATKNGQLL 284
           L I+ P+KG+I++  M+ G R+      K  +LL
Sbjct: 384 LAIHAPRKGIIEVWQMRTGPRLLTIQCAKGSKLL 417


>At1g61500.1 68414.m06929 S-locus protein kinase, putative similar
           to KI domain interacting kinase 1 [Zea mays]
           gi|2735017|gb|AAB93834; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 804

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 239 EQSSRF-YGYEKRPTFIQYLWSSWS 310
           E+ SRF YG E + T I Y W SWS
Sbjct: 690 EKISRFSYGVEGK-TLIAYAWESWS 713


>At5g50630.1 68418.m06272 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 540

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 246 VAVFTATKNGQLLYNTCGLVGADKNYTQKK 335
           VA+F  T NG+  YNT  LV    N+ + +
Sbjct: 117 VAIFVGT-NGETYYNTASLVSCIHNFPESR 145


>At5g50520.1 68418.m06257 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 540

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 246 VAVFTATKNGQLLYNTCGLVGADKNYTQKK 335
           VA+F  T NG+  YNT  LV    N+ + +
Sbjct: 117 VAIFVGT-NGETYYNTASLVSCIHNFPESR 145


>At1g61460.1 68414.m06925 S-locus protein kinase, putative contains
           similarity to KI domain interacting kinase 1 [Zea mays]
           gi|2735017|gb|AAB93834; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 598

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 239 EQSSRF-YGYEKRPTFIQYLWSSW 307
           E+ SRF YG E++ T I Y W SW
Sbjct: 484 EKISRFSYGKEEK-TLIAYAWESW 506


>At1g61420.1 68414.m06921 S-locus lectin protein kinase family
           protein contains Pfam domains, PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain, and
           PF01453: Lectin (probable mannose binding)
          Length = 807

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 239 EQSSRF-YGYEKRPTFIQYLWSSW 307
           E+ SRF YG E++ T I Y W SW
Sbjct: 693 EKISRFSYGKEEK-TLIAYAWESW 715


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,186,265
Number of Sequences: 28952
Number of extensions: 172523
Number of successful extensions: 388
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)