Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0294
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.9  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    25   10.0 
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   10.0 
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   10.0 

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 373 YRCWILYYFYLLFISMNRFNYS 438
           +RC +L++F+LLF     F++S
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFS 134


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 388 LYYFYLLFISMNR 426
           +YYFYL F S+NR
Sbjct: 355 MYYFYLKFESLNR 367


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 197 ICKISHLSFLIMYYQFFFVSLWIRLPAK 114
           I +I+ L  + MYY ++ V+  IR+P K
Sbjct: 170 IIEINLLVHVTMYYYYYLVAKGIRVPWK 197


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 177 KFSDNVLPIFFCLFVDQIASKITR 106
           +++  V+P FF  FV  I++ +T+
Sbjct: 287 RYAAKVIPYFFAFFVSFISNNVTK 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,869
Number of Sequences: 5004
Number of extensions: 50124
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)