Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0294
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025716-13|AAL32239.1|  289|Caenorhabditis elegans Serpentine r...    31   0.74 
AF000197-5|AAB52900.3|  579|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z35601-3|CAO82062.1|  185|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z35600-5|CAO82036.1|  185|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AC025716-13|AAL32239.1|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 64 protein.
          Length = 289

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 364 CVSYRCWILYYFYLLFISMNRFNYSLTGTFEFV 462
           C ++ C I   FY  ++S ++  Y LTGTF  +
Sbjct: 158 CDNFNCVIKTCFYSYWVSRDQIQYILTGTFSVI 190


>AF000197-5|AAB52900.3|  579|Caenorhabditis elegans Hypothetical
           protein T21G5.1 protein.
          Length = 579

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = -2

Query: 119 AKLQEPLLIINTFCPN----SFLKNNKKKCT 39
           A L  PLLI+   CPN    S+L+ NK K T
Sbjct: 324 ATLNSPLLILMELCPNGSLISYLRKNKGKVT 354


>Z29121-1|CAA82387.3|  324|Caenorhabditis elegans Hypothetical
           protein ZK757.1 protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 546 LILKKYYC-FFLCRPHQLDWFLPSLY 472
           ++   + C FF+CRPH L  F P+++
Sbjct: 33  VVFNLFLCIFFICRPHLLRTFKPTIF 58


>Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical
           protein C33A12.11 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = -2

Query: 206 NKDICKISHLSFLIMYYQFFFVSLWIRLPAKLQEPLLIINTFC----PNSFLK 60
           ++++  +  LS LI +  FFF  L +RLPA       II++FC    PN +LK
Sbjct: 66  DRNVLFVISLSQLICFCLFFFDFLMVRLPA-----TGIISSFCASIAPNHWLK 113


>Z35601-3|CAO82062.1|  185|Caenorhabditis elegans Hypothetical
           protein R10E9.3a protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 218 CSFDNKDICKISHLSFLIMYYQFFFV 141
           CS D+   C I H+S +  +Y FFF+
Sbjct: 130 CSVDHP--CSILHISLIERFYLFFFI 153


>Z35600-5|CAO82036.1|  185|Caenorhabditis elegans Hypothetical
           protein R10E9.3a protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 218 CSFDNKDICKISHLSFLIMYYQFFFV 141
           CS D+   C I H+S +  +Y FFF+
Sbjct: 130 CSVDHP--CSILHISLIERFYLFFFI 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,904,854
Number of Sequences: 27780
Number of extensions: 271331
Number of successful extensions: 612
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)