Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0294
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   3.7  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   4.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   4.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   4.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   6.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.4  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 486 KTNLTDVVYKEKNNNI 533
           KT + DVVY   NN +
Sbjct: 75  KTRIIDVVYNASNNEL 90


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -1

Query: 315 LMSVTHTVYKILRNDFNLPP*YLLIKNKTVLEMLV 211
           ++ +++ + K++ NDFN       I N  V E+++
Sbjct: 378 ILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELIL 412


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 159 LPIFFCLFVDQIASKIT 109
           LP F C  +D I +K+T
Sbjct: 633 LPFFTCNIMDAICTKLT 649


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -1

Query: 315 LMSVTHTVYKILRNDFNLPP*YLLIKNKTVLEMLV 211
           ++ +++ + K++ NDFN       I N  V E+++
Sbjct: 378 ILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELIL 412


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -1

Query: 315 LMSVTHTVYKILRNDFNLPP*YLLIKNKTVLEMLV 211
           ++ +++ + K++ NDFN       I N  V E+++
Sbjct: 378 ILVLSNKMQKMVNNDFNFDDVNFRIMNANVNELIL 412


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 306 LTLTINITFKMISIFETMVVCFI*VLDTVLFLSTFYI 416
           L +T NIT +  ++F T+ +    +  + L + TFY+
Sbjct: 232 LDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYL 268


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 306 LTLTINITFKMISIFETMVVCFI*VLDTVLFLSTFYI 416
           L +T NIT +  ++F T+ +    +  + L + TFY+
Sbjct: 232 LDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYL 268


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 98  LIINTFCPNSFLKNNKK 48
           LI+NT C NS  +NN +
Sbjct: 577 LIMNTRCANSDNQNNNQ 593


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -1

Query: 315 LMSVTHTVYKILRNDFN 265
           ++++++ + KI+ NDFN
Sbjct: 381 MLALSNRMQKIINNDFN 397


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 173 FLIMYYQFFFVSLW 132
           F+I +  FF V+LW
Sbjct: 344 FIICWLPFFVVNLW 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,359
Number of Sequences: 438
Number of extensions: 3422
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)