Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0294
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly...    28   4.9  
At4g23280.1 68417.m03355 protein kinase, putative similar to rec...    27   6.4  

>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
           identical to GI:9957293; contains Pfam profile: PF01397
           terpene synthase family
          Length = 591

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 198 YLQNITFKFSDNVLPI-FFCLFVDQIASKITRTTIDHK 88
           Y+QN     S   + + F+C+F DQ++ ++  T   H+
Sbjct: 432 YMQNARISISSPTIFVHFYCVFSDQLSIQVLETLSQHQ 469


>At4g23280.1 68417.m03355 protein kinase, putative similar to
           receptor-like protein kinase 4 (gi:13506745), 5
           (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 656

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 397 NNTVSNTYMKHTTIVSNIEIILKVILIVNVSYTYSLQN 284
           N +++ TY  ++T  +N++ +L  +   N SY+   QN
Sbjct: 32  NCSITTTYSSNSTYSTNLKTLLSSLSSRNASYSTGFQN 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,494,113
Number of Sequences: 28952
Number of extensions: 223372
Number of successful extensions: 414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)