Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0293
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.34 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.46 
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.1  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   4.2  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   7.4  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.8  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   9.8  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = -2

Query: 337 TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEA 191
           TY+   I SS+ L+   S L++++S  +ASSS  PI   SSS VS   A
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSPIP-SSSSLVSTYSA 711


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = -2

Query: 403 TSELKTSLETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAF 224
           TS + TSL ++A               ++ SS+ +    S +L ++S    SSS      
Sbjct: 7   TSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66

Query: 223 KSSSWVSPSEA 191
            SSS+ SP+ +
Sbjct: 67  SSSSFTSPASS 77


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 267 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 362
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 426 NTVAAKSINDWVEENTNNRIKDLVNPDSLS 515
           +T +A SIN W+ +NT   I+ + N  SLS
Sbjct: 9   STSSASSIN-WIPKNTKTSIESVSNTISLS 37


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -3

Query: 372 LQNSRLVFHHHERILYSPF*AQRL*LI 292
           L+    +++ H ++++SPF +QR+ L+
Sbjct: 901 LEKQWTLYYSHSKLMFSPFSSQRIILL 927


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -1

Query: 353  FSTIMNVYFIRHFKLNAFN*SKITAFTREFCSYSIVVREAD 231
            F  ++N YF+ +   NA    ++   T ++C   ++ R+A+
Sbjct: 1072 FLEVLNSYFMSNTDSNAKRLQQLRRMTMDYCKRMLLDRKAN 1112


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 19/82 (23%), Positives = 40/82 (48%)
 Frame = -2

Query: 313 SSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEAKAN*ARGGSTENAERTTLF 134
           SS P + + +  + + SV  +S  G+P +  SSS  S  + ++       + N E++   
Sbjct: 95  SSNPRMPKSAHPISSRSVSASSHFGRPASAVSSSLNSSDDVRSMSDESMESYNDEKSVNA 154

Query: 133 PGLFFTTSVNILAVKLSFPFLS 68
             L  TT   + ++++++  LS
Sbjct: 155 SAL-RTTEDRLRSMEMAYAQLS 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,099
Number of Sequences: 5004
Number of extensions: 42564
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)