Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0293
         (551 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      72   4e-13
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      61   5e-10
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      54   6e-08
SB_2625| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.47 
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)           29   2.5  
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       29   2.5  
SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)         28   5.8  
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)           27   7.7  
SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_4113| Best HMM Match : Homeobox (HMM E-Value=1.7e-05)               27   7.7  
SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 38/135 (28%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
 Frame = +3

Query: 150 SAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANK 329
           S  S++  LA   L + G T  ++ K   FP D   +     ++ +  +  G ++ MAN+
Sbjct: 33  SPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDFLQALNASNSDGNQILMANR 92

Query: 330 VYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAK-SINDWVEENTNNRIKDLVNPD 506
           ++   G ++ E F   S++ F++++  +D+ KN+  A+ ++N WVE+ T ++IK+L+   
Sbjct: 93  LFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKNLIPEG 152

Query: 507 SLSSATAAVLVNAIY 551
             +  T   LVNA+Y
Sbjct: 153 MFNKDTILCLVNAVY 167


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
 Frame = +3

Query: 174 LAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRD---LRSIKGV-ELKMANKVYVH 341
           L  + L S G T  ++    G+ + +   T    K      L S  G  E+++ NK++ H
Sbjct: 5   LGLVYLGSRGTTAIQIANIFGWKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKIWGH 64

Query: 342 DGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTNNRIKDLVNPDSLSS 518
           D  ++ E F   +R+ ++S++  +DF +K   A K +N WV + T   IK+L+    ++S
Sbjct: 65  DEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIPHGVINS 124

Query: 519 ATAAVLVNAIY 551
            T  ++VNA+Y
Sbjct: 125 LTRLIIVNAVY 135


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = +3

Query: 309 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNNRI 485
           E+ +AN +++     + + F  + +  +++D+  +D+  +   A K +N WVEE T  +I
Sbjct: 49  EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108

Query: 486 KDLVNPDSLSSATAAVLVNAIY 551
            DL+ P   +  T   LVNAIY
Sbjct: 109 CDLIAPGVFNMLTRLTLVNAIY 130


>SB_2625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = -2

Query: 259 RIASSSGKPIAFKSSSWVSPSEAKAN*ARGG--STENAERTTL-FPGLFFTTSVNILAVK 89
           R   ++  P+  + ++   P+ +KA    GG  ST +A R+ + FP  F+T  +N     
Sbjct: 72  RFECAAPAPLVLRVTTDHGPNTSKATYENGGDISTLSAGRSAMAFPLTFYTRRINEFLCH 131

Query: 88  LSFPFLSTLERSSD 47
            + PFL  +   SD
Sbjct: 132 KTMPFLYPISGHSD 145


>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
          Length = 257

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 361 RILQSFPGTSSIRTSKTLISRRIQSQLS 444
           R+  SFPG S      TL++R  QSQ+S
Sbjct: 65  RLYDSFPGASRSEAESTLLARMRQSQVS 92


>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +3

Query: 351 KLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDW---VEENTNNRIKD 491
           K +E+  + S  +F+ + +N+DFS +     ++ DW   VE    N ++D
Sbjct: 460 KFEEDLRISS--MFSGEGENVDFSTDLYPTGNVEDWLLEVENTMRNSLRD 507


>SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +3

Query: 51  EDLSNVLKNGN--DNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETHEELL 224
           ++LS  L +G   +  T+  + ++ +  P  S VLS  S  PPL  +    +  T   + 
Sbjct: 198 KELSEFLNSGPRVEESTSSTYNKI-ELGPQSSGVLSLTSDPPPLEAMGKEGEAHTDSGVE 256

Query: 225 KAIGFPDDDAI 257
           + I  PD++A+
Sbjct: 257 EEIDIPDEEAV 267


>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
          Length = 672

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 201 HQKLKLTEREEAAPKMPRGQRFSL 130
           HQ L + E + ++PK PR  +F L
Sbjct: 56  HQNLSINEMDSSSPKRPRQHQFGL 79


>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 201 HQKLKLTEREEAAPKMPRGQRFSL 130
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 201 HQKLKLTEREEAAPKMPRGQRFSL 130
           HQ L + E + ++PK PR  +F L
Sbjct: 50  HQNLSINEMDSSSPKRPRQHQFGL 73


>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 201 HQKLKLTEREEAAPKMPRGQRFSL 130
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 201 HQKLKLTEREEAAPKMPRGQRFSL 130
           HQ L + E + ++PK PR  +F L
Sbjct: 7   HQNLSINEMDSSSPKCPRQHQFGL 30


>SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
          Length = 1541

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 344  WWKTRREFCSRFQGRLQFGRPK 409
            W + RRE+C++ Q R ++ +P+
Sbjct: 1275 WLRWRREYCTQLQSRQKWNKPQ 1296


>SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 342 DGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNRIKDLVNPDS 509
           D   + +N  ++  +  NSD  N   + NT    +I+D    + NN I D  N D+
Sbjct: 211 DNNNISDNNNIIDNN--NSDNNNTSDNNNTSDNNNISDNNNTSDNNNISDNNNSDN 264


>SB_4113| Best HMM Match : Homeobox (HMM E-Value=1.7e-05)
          Length = 224

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
 Frame = +3

Query: 243 DDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 422
           D   +R+    K    R I+G   +M +K+      KLD  F  +  D   +  ++   +
Sbjct: 30  DSGLVRSPAVIKPHRKRRIRGTAKRMRSKLSKRQVNKLDAAF--MENDFPTTIARHKLAA 87

Query: 423 KNTVAAKSINDWVEEN-TNNR--IKDLVNPDSLSSATAAV 533
           +     K I  W+++N   NR  ++DL  P +  SA  ++
Sbjct: 88  EIKAPVKRIKSWLKQNRAKNRAQLRDLA-PSASESAAISI 126


>SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 201 HQKLKLTEREEAAPKMPRGQRF 136
           H+ L + ER+ ++PK PR  +F
Sbjct: 21  HENLSINERDSSSPKRPRQHQF 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,961,954
Number of Sequences: 59808
Number of extensions: 305072
Number of successful extensions: 819
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)