Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0292
(336 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 49 2e-07
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 28 0.44
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 28 0.44
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 25 3.1
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 4.1
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 24 5.4
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 24 5.4
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 24 5.4
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 24 7.1
SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces po... 24 7.1
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 23 9.4
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 49.2 bits (112), Expect = 2e-07
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +1
Query: 214 VFAIVLFFLGNFGITGGAHRLWSHNGYKVKLPLEILL 324
+FAI+ + GIT G HRLWSH YK K PLE L
Sbjct: 92 IFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFL 128
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 27.9 bits (59), Expect = 0.44
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +3
Query: 33 NETEYLKDNHVDYEKLIAPQASPIKHKIVVMNVIRFSYLHSCCVYMXLYLCFTSAKLATS 212
NE YL+++ + LIA +P K +++ S+L+SC ++ T+A+L T
Sbjct: 505 NEPPYLREDPIRALYLIAKNGTPTLKKPNLVSKNLKSFLNSCLTIDTIFRA-TAAELLTH 563
Query: 213 GF 218
F
Sbjct: 564 SF 565
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 27.9 bits (59), Expect = 0.44
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 18 SVDKTNETEYLKDNHVDYEKLIAPQASPIKHKIVVM 125
S+ N EYL D+ V+ KL + P+K K++ +
Sbjct: 28 SLTSINSAEYLYDSFVEISKLPLEKKLPLKWKLITV 63
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 25.0 bits (52), Expect = 3.1
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 12 PNSVDKTNETEYLKDNHVDYE---KLIAPQASPIKHKIVVM 125
PN V N + + NH+D E KLI + ++ +I V+
Sbjct: 589 PNQVSMPNISNIVSTNHLDVETQMKLIMDENQRLREQIAVL 629
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 24.6 bits (51), Expect = 4.1
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +3
Query: 108 HKIVVMNVIRFSYLHSCCVYMXLYLCFTSAKLATS 212
H I + +++S+ + CC + LC+ K T+
Sbjct: 2397 HDIPPHSEVKYSWDYPCCANKEIALCYGDQKCLTT 2431
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.2 bits (50), Expect = 5.4
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +3
Query: 12 PNSVDKTNETEYLKDNHVDYEKLIAPQASPIKHKIVVMN 128
PNSV E +LK D I P SP V +N
Sbjct: 198 PNSVSIVEENPFLKKIIYDIHHNIYPSTSPNPTSPVTLN 236
>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 24.2 bits (50), Expect = 5.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 3 KMPPNSVDKTNETEYLKDNHVDYEK 77
K+ SV T ET ++K+NH D ++
Sbjct: 4 KIRSQSVLNTLETFFIKENHYDMQR 28
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 24.2 bits (50), Expect = 5.4
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +3
Query: 12 PNSVDKTNETEYLKDNHVDYEKLIAPQASPIKHKIVVMN 128
PNSV E +LK D I P SP V +N
Sbjct: 198 PNSVSIVEENPFLKKIIYDIHHNIYPSTSPNPTSPVTLN 236
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 23.8 bits (49), Expect = 7.1
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 102 IKHKIVVMNVIRF--SYLHSCCVYMXLYLCFTSAKL 203
+ K+ ++ I F +YL S C + Y+ SAK+
Sbjct: 492 LNRKVRMLQPIFFICTYLESACTVLLFYIASNSAKI 527
>SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 164
Score = 23.8 bits (49), Expect = 7.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 159 CVYMXLYLCFTSAKLATSGFCY 224
C++M L T LA +G CY
Sbjct: 112 CIFMATSLIATGIVLALTGLCY 133
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 33 NETEYLKDNHVDYEKLI 83
N YL D VD+EK+I
Sbjct: 96 NSLYYLDDEEVDFEKII 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,357,723
Number of Sequences: 5004
Number of extensions: 23540
Number of successful extensions: 66
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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