BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= P5PG0292 (336 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317... 30 0.53 07_01_0548 - 4061829-4062956 27 3.8 03_02_0693 - 10441253-10441294,10441404-10441511,10441594-104416... 27 3.8 05_03_0096 + 8356109-8356231,8356291-8356605 27 5.0 01_05_0810 - 25435193-25435323,25435434-25436360,25436459-254369... 27 5.0 10_06_0080 + 10441055-10443856 26 6.6 08_01_0350 - 3087631-3088461 26 8.7 03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231,704... 26 8.7 >04_04_0962 + 29728983-29729034,29729622-29731369,29731656-29731742, 29732035-29732199,29732437-29732526,29732863-29733027, 29733124-29733418,29733550-29733764,29733879-29733947, 29734107-29734184,29734466-29734529,29734658-29734897, 29734985-29735124 Length = 1135 Score = 29.9 bits (64), Expect = 0.53 Identities = 19/63 (30%), Positives = 29/63 (46%) Frame = +1 Query: 136 VLAIYIVAVSIWXFISVSPQQNWLHRVFAIVLFFLGNFGITGGAHRLWSHNGYKVKLPLE 315 V+A ++ A I F+ N R +++VL F+G I A+R W +V L L Sbjct: 132 VVASFVGAYLIKDFVGYLSGDNGFERGYSLVLVFVGAKAIETLAYRQWFFGSLQVYLRLR 191 Query: 316 ILL 324 L Sbjct: 192 TSL 194 >07_01_0548 - 4061829-4062956 Length = 375 Score = 27.1 bits (57), Expect = 3.8 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +3 Query: 3 KMPPNSVDKTNETEYLKDNHVDYE 74 ++PP DK + +L DNH D+E Sbjct: 180 EVPPAIFDKKIDALFLNDNHFDFE 203 >03_02_0693 - 10441253-10441294,10441404-10441511,10441594-10441677, 10441765-10443062,10443111-10444804,10444890-10444957, 10445057-10445186,10445292-10445415,10445551-10445711, 10446714-10446868 Length = 1287 Score = 27.1 bits (57), Expect = 3.8 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +3 Query: 6 MPPNSVDKTNETEYLKDNHVDYEKLIAPQASPI 104 M PNS D E D+H Y + +PQA P+ Sbjct: 394 MVPNSSDVVPAEEENNDHHQGYVCVPSPQAKPV 426 >05_03_0096 + 8356109-8356231,8356291-8356605 Length = 145 Score = 26.6 bits (56), Expect = 5.0 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = +3 Query: 177 YLCFTSAKLATSGFCYCVILPWELWYYR 260 Y+ T LAT G C P WYY+ Sbjct: 48 YMIITCGYLATCGAVPCTAAPEPNWYYK 75 >01_05_0810 - 25435193-25435323,25435434-25436360,25436459-25436987, 25437089-25437190 Length = 562 Score = 26.6 bits (56), Expect = 5.0 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = -2 Query: 134 YHVHHYNFVFDGRGLG 87 +H+H YNF GRG+G Sbjct: 465 FHLHGYNFFVVGRGVG 480 >10_06_0080 + 10441055-10443856 Length = 933 Score = 26.2 bits (55), Expect = 6.6 Identities = 12/52 (23%), Positives = 26/52 (50%) Frame = +3 Query: 24 DKTNETEYLKDNHVDYEKLIAPQASPIKHKIVVMNVIRFSYLHSCCVYMXLY 179 DKT E N +D+E + P +++ + + + ++L SC +Y ++ Sbjct: 392 DKTEEEFRRIQNQLDWELINNPSLEHVRNILYLSYIYLPTHLKSCFLYCSMF 443 >08_01_0350 - 3087631-3088461 Length = 276 Score = 25.8 bits (54), Expect = 8.7 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +1 Query: 211 RVFAIVLFFLGNFGITGGAHRLWSHNGYKVKLPL 312 + FAI++ FL F + + R +SH G V +PL Sbjct: 129 KFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPL 162 >03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231, 7044943-7045491,7045556-7045680,7045824-7045966 Length = 624 Score = 25.8 bits (54), Expect = 8.7 Identities = 14/43 (32%), Positives = 18/43 (41%) Frame = +3 Query: 183 CFTSAKLATSGFCYCVILPWELWYYRWXXXXXXXXWLQSQTAP 311 CF + A S C CV+ WELW + W+ T P Sbjct: 288 CFNCSSEAHSP-CSCVM--WELWIKKCRDESETVNWITVNTKP 327 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,779,736 Number of Sequences: 37544 Number of extensions: 149038 Number of successful extensions: 364 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 360 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 364 length of database: 14,793,348 effective HSP length: 72 effective length of database: 12,090,180 effective search space used: 471517020 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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