Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0292
         (336 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317...    30   0.53 
07_01_0548 - 4061829-4062956                                           27   3.8  
03_02_0693 - 10441253-10441294,10441404-10441511,10441594-104416...    27   3.8  
05_03_0096 + 8356109-8356231,8356291-8356605                           27   5.0  
01_05_0810 - 25435193-25435323,25435434-25436360,25436459-254369...    27   5.0  
10_06_0080 + 10441055-10443856                                         26   6.6  
08_01_0350 - 3087631-3088461                                           26   8.7  
03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231,704...    26   8.7  

>04_04_0962 +
           29728983-29729034,29729622-29731369,29731656-29731742,
           29732035-29732199,29732437-29732526,29732863-29733027,
           29733124-29733418,29733550-29733764,29733879-29733947,
           29734107-29734184,29734466-29734529,29734658-29734897,
           29734985-29735124
          Length = 1135

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 136 VLAIYIVAVSIWXFISVSPQQNWLHRVFAIVLFFLGNFGITGGAHRLWSHNGYKVKLPLE 315
           V+A ++ A  I  F+      N   R +++VL F+G   I   A+R W     +V L L 
Sbjct: 132 VVASFVGAYLIKDFVGYLSGDNGFERGYSLVLVFVGAKAIETLAYRQWFFGSLQVYLRLR 191

Query: 316 ILL 324
             L
Sbjct: 192 TSL 194


>07_01_0548 - 4061829-4062956
          Length = 375

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 3   KMPPNSVDKTNETEYLKDNHVDYE 74
           ++PP   DK  +  +L DNH D+E
Sbjct: 180 EVPPAIFDKKIDALFLNDNHFDFE 203


>03_02_0693 -
           10441253-10441294,10441404-10441511,10441594-10441677,
           10441765-10443062,10443111-10444804,10444890-10444957,
           10445057-10445186,10445292-10445415,10445551-10445711,
           10446714-10446868
          Length = 1287

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 6   MPPNSVDKTNETEYLKDNHVDYEKLIAPQASPI 104
           M PNS D     E   D+H  Y  + +PQA P+
Sbjct: 394 MVPNSSDVVPAEEENNDHHQGYVCVPSPQAKPV 426


>05_03_0096 + 8356109-8356231,8356291-8356605
          Length = 145

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 177 YLCFTSAKLATSGFCYCVILPWELWYYR 260
           Y+  T   LAT G   C   P   WYY+
Sbjct: 48  YMIITCGYLATCGAVPCTAAPEPNWYYK 75


>01_05_0810 -
           25435193-25435323,25435434-25436360,25436459-25436987,
           25437089-25437190
          Length = 562

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 134 YHVHHYNFVFDGRGLG 87
           +H+H YNF   GRG+G
Sbjct: 465 FHLHGYNFFVVGRGVG 480


>10_06_0080 + 10441055-10443856
          Length = 933

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +3

Query: 24  DKTNETEYLKDNHVDYEKLIAPQASPIKHKIVVMNVIRFSYLHSCCVYMXLY 179
           DKT E      N +D+E +  P    +++ + +  +   ++L SC +Y  ++
Sbjct: 392 DKTEEEFRRIQNQLDWELINNPSLEHVRNILYLSYIYLPTHLKSCFLYCSMF 443


>08_01_0350 - 3087631-3088461
          Length = 276

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 211 RVFAIVLFFLGNFGITGGAHRLWSHNGYKVKLPL 312
           + FAI++ FL  F +   + R +SH G  V +PL
Sbjct: 129 KFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPL 162


>03_02_0275 +
           7042433-7042732,7042864-7043140,7043751-7044231,
           7044943-7045491,7045556-7045680,7045824-7045966
          Length = 624

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 183 CFTSAKLATSGFCYCVILPWELWYYRWXXXXXXXXWLQSQTAP 311
           CF  +  A S  C CV+  WELW  +         W+   T P
Sbjct: 288 CFNCSSEAHSP-CSCVM--WELWIKKCRDESETVNWITVNTKP 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,779,736
Number of Sequences: 37544
Number of extensions: 149038
Number of successful extensions: 364
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)