Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0292
         (336 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)               38   0.002
SB_39574| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_39106| Best HMM Match : Prion (HMM E-Value=1.2)                     26   8.7  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +1

Query: 247 FGITGGAHRLWSHNGYKVKLPLEILL 324
           +G+T GAHRLW+H  +K K PL +++
Sbjct: 18  YGVTIGAHRLWAHRTFKAKWPLRLVI 43


>SB_39574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 146 IAKTYHVHHYNFVFDGRGLGCNEFFII 66
           I   +H   YN  +DG G G N  F+I
Sbjct: 436 IVLMFHTFVYNKTYDGFGEGHNRLFVI 462


>SB_39106| Best HMM Match : Prion (HMM E-Value=1.2)
          Length = 523

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 12  PNSVDKT-NETEYLKDNHVDYEKLIAPQASPIKHKIVVMNVIRFSYL 149
           P+ +DK  NE E    N+V+Y + +AP    I  +  V    R SYL
Sbjct: 258 PHILDKAANEVE----NNVEYSQPVAPNTQHIDEQDSVTKTRRVSYL 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,219,199
Number of Sequences: 59808
Number of extensions: 173379
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)