Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0292
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.24 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.57 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   0.75 
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   3.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   7.0  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    20   9.2  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    20   9.2  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.0 bits (52), Expect = 0.24
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 90  QASPIKHKIVVMNVIRFSYLHS 155
           +++P KH ++V+  + FS LH+
Sbjct: 62  KSTPCKHPVIVLQDVAFSDLHA 83


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 0.57
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 218 LLLCYSSLGTLVLQVELIVCGL 283
           +LLCY     LVL+   IVCG+
Sbjct: 702 ILLCYLVTFALVLRPTDIVCGI 723


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 0.75
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +3

Query: 93  ASPIKHKIVVMNVIRFSYLHSCCVYMXLYLCFTSAKLATSGFCYCVILPWELWYYRW 263
           A+   + +V++ V+R  YLH+   Y    L F    +      +  I  +E+   RW
Sbjct: 58  ATVFGNTLVILAVVRERYLHTATNYFVTSLAFADCLVGLVVMPFSAI--YEVLENRW 112


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 209 IGFLLLCYSSLGTLV 253
           +GFL  C ++LGT V
Sbjct: 264 LGFLTFCPTNLGTTV 278


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 222 YCVILPWELWYY 257
           Y VIL W ++Y+
Sbjct: 77  YIVILAWAIFYF 88


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +2

Query: 203 GYIGFLLLCYSSLGTLVLQVELIVC 277
           G +  +++  +SLG L+L +  ++C
Sbjct: 131 GLVAGIVIGVTSLGLLLLALVAVLC 155


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +2

Query: 203 GYIGFLLLCYSSLGTLVLQVELIVC 277
           G +  +++  +SLG L+L +  ++C
Sbjct: 102 GLVAGIVIGVTSLGLLLLALVAVLC 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,620
Number of Sequences: 438
Number of extensions: 1726
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)