Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0292
         (336 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26590.1 68417.m03833 oligopeptide transporter OPT family pro...    30   0.33 
At1g06350.1 68414.m00671 fatty acid desaturase family protein si...    28   1.3  
At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to ...    28   1.8  
At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to ...    28   1.8  
At5g41880.1 68418.m05099 DNA primase small subunit family contai...    27   2.4  
At2g16090.1 68415.m01845 zinc finger protein-related contains si...    27   2.4  
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa...    27   3.1  
At4g35870.1 68417.m05094 expressed protein                             27   4.1  
At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-contain...    27   4.1  
At4g39030.1 68417.m05528 enhanced disease susceptibility 5 (EDS5...    26   5.4  
At3g52730.1 68416.m05810 ubiquinol-cytochrome C reductase UQCRX/...    26   5.4  
At5g22130.1 68418.m02576 mannosyltransferase family protein simi...    26   7.2  
At3g15850.1 68416.m02005 fatty acid desaturase family protein si...    26   7.2  
At5g58910.1 68418.m07380 laccase, putative / diphenol oxidase, p...    25   9.5  
At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) fa...    25   9.5  

>At4g26590.1 68417.m03833 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 753

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +1

Query: 133 YVLAIYIVAVSIWXFISVSPQQNWLHRVFAIVLFFLGNFGITGGAHRLWS 282
           + L  ++  V +W F    P++ W+H++   ++F   N      A   WS
Sbjct: 620 FFLIGFLAPVPVWFFARKFPEKKWIHQIHIPLIFSGANVMPMAKAVHYWS 669


>At1g06350.1 68414.m00671 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 300

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 202 WLHRVFAIVLFFLGNFGITGGAHRLWSHNGYKVKLPLE 315
           W    F +VLF L    IT   HR  SH  +K+   LE
Sbjct: 56  WEALRFGLVLFALTTLSITFSFHRNLSHRSFKIPKWLE 93


>At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to
           delta 9 acyl-lipid desaturase (ADS2) GI:2970036 from
           [Arabidopsis thaliana]
          Length = 307

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 202 WLHRVFAIVLFFLGNFGITGGAHRLWSHNGYKVKLPLEILL 324
           W       + + +G  GIT   HR  +H  +KV   LE LL
Sbjct: 63  WSALWVTFLFYTIGGLGITVSYHRNLAHRSFKVPKWLEYLL 103


>At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to
           delta 9 acyl-lipid desaturase (ADS1) GB:BAA25180
           GI:2970034 from [Arabidopsis thaliana]
          Length = 305

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 220 AIVLFFLGNFGITGGAHRLWSHNGYKVKLPLE 315
           A++++ +G  GIT   HR  +H  +KV   LE
Sbjct: 67  ALIVYTVGGLGITVSYHRNLAHRSFKVPKWLE 98


>At5g41880.1 68418.m05099 DNA primase small subunit family contains
           Pfam profile: PF01896 DNA primase small subunit
          Length = 407

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 167 IDTATM*IAKTYHVHHYNFVFDGRGLGCNEFF 72
           ID     I   ++VH+    +DG+  GC+E++
Sbjct: 15  IDDPKPKIENDFNVHYLRIYYDGKHPGCDEYY 46


>At2g16090.1 68415.m01845 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 593

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 174 LYLCFTSAKLATSGFCYCVILPWELWYYRWXXXXXXXXWLQSQTAP 311
           L  CF+ +  A S  C CV+  WELW  +         W+   T P
Sbjct: 241 LQFCFSCSSQAHSP-CSCVM--WELWRKKCFDESETVNWITVHTKP 283


>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 396

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 66  DYEKLIAPQASPIKHKIVVMNVIRFSYLHSCC 161
           D+EK    +  P KHK  V  ++ +  LHS C
Sbjct: 265 DFEKGTEAKEMPCKHKFHVRCIVPWLELHSSC 296


>At4g35870.1 68417.m05094 expressed protein
          Length = 817

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 202 WLHRVFAIVLFFLGNFGITGGAHRL 276
           WLH VF +++  + +FGI     RL
Sbjct: 158 WLHFVFVVIVVVISHFGIAAIEARL 182


>At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-containing
           protein contains Pfam profile PF00169: PH domain
          Length = 1322

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 223 IVLFFLGNFGITGGAHRLWSH 285
           + LFFL + G     HRLW H
Sbjct: 277 LYLFFLTDAGFLRNLHRLWKH 297


>At4g39030.1 68417.m05528 enhanced disease susceptibility 5 (EDS5) /
           salicylic acid induction deficient 1 (SID1) identical to
           SP|Q945F0; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 543

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 194 SKIGYIGFLLLCYSSLGTLVLQVELIV 274
           SKI +  F++ C +S+GT VL    ++
Sbjct: 335 SKIAFYSFIIYCATSMGTHVLAAHQVM 361


>At3g52730.1 68416.m05810 ubiquinol-cytochrome C reductase
           UQCRX/QCR9-like family protein contains Pfam profile:
           PF05365 ubiquinol-cytochrome C reductase, UQCRX/QCR9
           like
          Length = 72

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 175 FISVSPQQNWLHRVFAIVLFFLGNFGITGGAHRLWSHN 288
           F  +  ++N ++  F I   F G   +  G H+LW  N
Sbjct: 16  FYKLIMRRNSVYVTFIIAGAFFGERAVDYGVHKLWERN 53


>At5g22130.1 68418.m02576 mannosyltransferase family protein similar
           to mannosyltransferase from Rattus norvegicus
           [GI:11414877], Homo sapiens [GI:11414879]; contains Pfam
           profile PF05007: Mannosyltransferase (PIG-M)
          Length = 450

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
 Frame = +3

Query: 159 CVYMXLYLCFTSAKLATSGFC---YCV---ILPWELWYYRWXXXXXXXXWLQSQT 305
           C+++      T  K+ T+ +    YC+   ILPW     +W        W+ +QT
Sbjct: 332 CIFLQTVAFVTFNKVITAQYFVWFYCLLPLILPWSHMKLKWEGLLCIIMWIGAQT 386


>At3g15850.1 68416.m02005 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 371

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 154 VAVSIWXFISVSPQQ-NWLHRVFAIVLFFL-GNFGITGGAHRLWSHNGYKVKLPLEIL 321
           V +S+     ++P Q NW     A  L+ + G  GIT   HR  SH  +K+   LE L
Sbjct: 108 VVLSMHLLSLLAPFQFNWRAVSVAFGLYIVTGLLGITLSFHRNLSHKAFKLPKWLEYL 165


>At5g58910.1 68418.m07380 laccase, putative / diphenol oxidase,
           putative similar to diphenol oxidase [Nicotiana
           tabacum][GI:1685087]
          Length = 523

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 134 YHVHHYNFVFDGRGLG 87
           +H+H +NF   GRGLG
Sbjct: 426 FHLHGFNFFEVGRGLG 441


>At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) family
            protein / pentatricopeptide (PPR) repeat-containing
            protein contains Pfam domains PF01535: PPR repeat and
            PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 1208

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 75   KLIAPQASPIKHKIVVMNVIRFS 143
            K+I P     +H +VVMN+ RF+
Sbjct: 1097 KIIVPTTQQPEHHVVVMNLDRFT 1119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,161,208
Number of Sequences: 28952
Number of extensions: 125015
Number of successful extensions: 324
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)