Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0291
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    26   3.7  
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos...    26   4.9  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    25   6.5  

>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 455 FMPCPMELPHHLPILDLPNPNPY 387
           F+PC   L H L ++ L +PN Y
Sbjct: 244 FIPCIKLLEHRLQVICLDSPNDY 266


>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 503 ILTRSIKNEPKDKKN*FMPCPMELPHHLPILDLPNPNP 390
           ++ +S+KN  ++  N   P   E     P+L + N NP
Sbjct: 181 VIPQSVKNAVRNSVNSVKPTSAEASLFSPLLSMANANP 218


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 452 MPCPMELPHHLPILDLPNPNPYL 384
           +PCP+EL  ++  +D    N YL
Sbjct: 204 LPCPVELKPNITAIDTAERNSYL 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,421
Number of Sequences: 5004
Number of extensions: 38128
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)