Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0291
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396...    29   3.8  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    27   8.7  

>01_06_1507 -
           37838645-37839311,37839393-37839499,37839588-37839663,
           37839747-37839869,37840051-37840208,37840311-37840385,
           37840466-37840506,37840594-37840670,37840755-37840883,
           37840990-37841060,37841237-37841332,37841489-37841584,
           37841681-37841953,37842871-37842957,37843101-37843178,
           37843350-37843514,37843622-37843768,37843921-37843983,
           37844082-37844201,37844352-37844543,37844672-37844748,
           37845094-37845196,37845684-37845887
          Length = 1074

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 450 HKLIFFILRFVFYRPGQDVKLFIYCG 527
           H++ F ILR V Y PGQ  K F+ CG
Sbjct: 244 HEVHFSILREVVYTPGQQDKCFL-CG 268


>04_03_0018 -
           9434088-9434141,9434211-9434282,9434968-9435062,
           9435445-9435526,9435610-9435660,9435749-9435829,
           9435965-9436006,9436117-9436215,9438130-9438201,
           9438557-9438680,9438850-9439723,9440274-9440456,
           9440941-9442741,9442825-9443049,9443117-9443814,
           9444519-9444591
          Length = 1541

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 140 CTLTQSNDGFAYKNFIDNLICTSKRSCVQTYYFV 241
           C  T++ + F YKN++DN++   +   V +   V
Sbjct: 29  CFSTETMEQFEYKNYLDNIVLQLREQFVDSSLMV 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,608,285
Number of Sequences: 37544
Number of extensions: 209270
Number of successful extensions: 378
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)