Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0291
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   2.9  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   3.9  
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 842

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 93  FTQSQLYHVNTLLYFQCGCCMTVCASCRI 7
           F ++ L   + L+YF C C M V  +C I
Sbjct: 175 FQKTNLKPASLLIYFSCSCSMLVLTTCYI 203


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 125 LQLSNCTLTQSNDGFAYKNFIDNLICTSKRS 217
           L+++   LT   D ++YKN+I NL+   + S
Sbjct: 106 LEMNGILLTLQTDSYSYKNYIKNLLSHPQES 136


>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1169

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 140 CTLTQSNDGFAYKNFIDNLICTSKRSC 220
           C +   N  F  KN +D L+CT+ R C
Sbjct: 895 CPVGTYNPSFGAKNVLDCLMCTAGRYC 921


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,545,265
Number of Sequences: 59808
Number of extensions: 277231
Number of successful extensions: 516
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)