Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0291
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003383-1|AAB54234.1|  379|Caenorhabditis elegans Hypothetical ...    28   4.5  
AC006673-7|AAF39925.2|  332|Caenorhabditis elegans Serpentine re...    28   4.5  
AC024796-11|AAK29890.2|  828|Caenorhabditis elegans Hypothetical...    28   5.9  

>AF003383-1|AAB54234.1|  379|Caenorhabditis elegans Hypothetical
           protein ZC250.2 protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 548 LRYHHHPTYFC 580
           LR HHHP YFC
Sbjct: 119 LRLHHHPDYFC 129


>AC006673-7|AAF39925.2|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein4 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 178 KFHRQFNMHKQEVMCSNILFCNYDLL 255
           K  ++F   K  + C N  FCN+D L
Sbjct: 167 KMEKRFGTFKPYMWCDNCFFCNFDSL 192


>AC024796-11|AAK29890.2|  828|Caenorhabditis elegans Hypothetical
           protein Y48G1C.8 protein.
          Length = 828

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 446 CPMELPHHLPILDLPNPNPYLEH 378
           CP E+P   PI++LP+ N YL H
Sbjct: 335 CPGEIP---PIVNLPHGNDYLRH 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,710,545
Number of Sequences: 27780
Number of extensions: 215352
Number of successful extensions: 431
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)