Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0291
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ...    29   3.2  
At2g38100.1 68415.m04677 proton-dependent oligopeptide transport...    27   9.6  

>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
           XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
          Length = 1020

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 450 HKLIFFILRFVFYRPGQDVKLFIYCGIM 533
           H++ F ILR V Y PGQ  + F+ CG M
Sbjct: 244 HEVHFSILREVVYTPGQQERCFL-CGQM 270


>At2g38100.1 68415.m04677 proton-dependent oligopeptide transport
           (POT) family protein low similarity to SP|P46032 Peptide
           transporter PTR2-B (Histidine transporting protein)
           {Arabidopsis thaliana}; contains Pfam profile PF00854:
           POT family
          Length = 521

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 203 TSKRSCVQTYYFVITIYC*IQFLL 274
           T  +S V  YY+VIT++C    LL
Sbjct: 469 TINKSRVDNYYWVITVFCMFNLLL 492


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,590,532
Number of Sequences: 28952
Number of extensions: 182063
Number of successful extensions: 364
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)