Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0289
(382 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 29 0.25
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 29 0.25
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 28 0.43
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 28 0.57
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc... 27 0.99
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 26 2.3
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 26 2.3
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 3.0
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 4.0
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 5.3
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 25 5.3
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 24 7.0
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||... 24 7.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 24 7.0
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 24 7.0
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 24 7.0
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 29.1 bits (62), Expect = 0.25
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 91 SANPPLRPGFESIPRGHRRIHKHHYRSHL 177
+AN L+ G E + HRR HK Y HL
Sbjct: 1669 NANTNLKYGLEDMSLSHRRGHKRTYDEHL 1697
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 29.1 bits (62), Expect = 0.25
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 91 SANPPLRPGFESIPRGHRRIHKHHYRSHL 177
+AN L+ G E + HRR HK Y HL
Sbjct: 1669 NANTNLKYGLEDMSLSHRRGHKRTYDEHL 1697
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 28.3 bits (60), Expect = 0.43
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 110 GPDSNLSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLS 244
GP SN S + TDH++ I KE+D+ + + S
Sbjct: 29 GPPSNFKNNSLTSSTHSSTDHVNVLPISQDKEMDISSPVKKQKAS 73
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 27.9 bits (59), Expect = 0.57
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1
Query: 70 HVPTRSRSANPPLRPGFESIPRGHRRI---HKHHYR 168
H+P ++ + PL P + IP+G RR K HYR
Sbjct: 66 HLPLKNVYSQVPLLPVWSPIPKGPRRFLLPPKFHYR 101
>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 0.99
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 44 TMVDWNKLCTCLLEAAPPILPYGPDSNLSPEDTVESIN 157
TM D N+ C L+ PPI Y D++ + VE+IN
Sbjct: 256 TMTDSNQFHACCLDTFPPIF-YLNDTSRAVIRVVENIN 292
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 2.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 79 TRSRSANPPLRPG-FESIPRGHRRIHKHHYRSHLF 180
T SRS N G F+ IPR R I+ H Y+S+++
Sbjct: 438 TWSRSGNQTDYLGAFQRIPRHLRSIYPHAYQSYVW 472
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 2.3
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 122 NLSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRL 241
N+ E+ + I+++ H+S I S +D+ S R+R+
Sbjct: 103 NIKDEEELHYISLLNKHLSKGQILFSPTLDLTCSLQRLRV 142
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.4 bits (53), Expect = 3.0
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 77 LLEAAPPILPYGPDSNLSPEDTVESINIITDHISSAIIRSSKEVDVEDSFH 229
LLEA +L Y + N +D + INI+ +S + S K + + FH
Sbjct: 773 LLEA---VLKYTDEGNPDKQDIPKVINIVRGFLSRLNVESGKAENKFNLFH 820
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 4.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 296 RSSSHAFKPDSDASSTTRSPLPPKRR 373
R SS+A K SDA+ T S LPP ++
Sbjct: 535 RPSSNALK--SDANENTDSSLPPSKK 558
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 5.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 119 SNLSPEDTVESINIITDHISSAIIRSSKEVD 211
S+LSP+ + I DH+S +I + K V+
Sbjct: 6 SSLSPKVSQPGHTEIVDHVSEKVITNGKNVN 36
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 5.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 67 VHVPTRSRSANPPLRP 114
VH+P R PPLRP
Sbjct: 141 VHMPEMKRKFKPPLRP 156
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 24.2 bits (50), Expect = 7.0
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Frame = +2
Query: 125 LSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLS------SGT*ESLKS*ERGN 286
L PE+T +S+N + + + S++ + S +I LS S +L+ G+
Sbjct: 749 LFPENTADSLNEVLAAYKNTLDLCSQDKRKQSSVLKINLSKLFTLHSCLSLALQRLGYGD 808
Query: 287 PGLRSSSHAFKPDSDASSTTRS 352
R F PDSDA T S
Sbjct: 809 VSKRMYQEIFVPDSDADITPLS 830
>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
3|||Manual
Length = 264
Score = 24.2 bits (50), Expect = 7.0
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +3
Query: 99 SSLTARIRIYPPRTPSNP*TSLPITSLPRSLDLQKKSMW 215
S T R +P P N TSL + P + +S W
Sbjct: 193 SQTTTRYTSFPKFNPENSVTSLDLVEPPENYSWAPQSDW 231
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 24.2 bits (50), Expect = 7.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 7 ARSPSQPSHCYEDHGGLE*AVHVPTRSRSANPPLRP 114
A S P+H Y+ HGG + V P + + PL P
Sbjct: 990 ASSTVNPAHTYKPHGGSQ-IVPPPKQPANRVVPLPP 1024
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 24.2 bits (50), Expect = 7.0
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -3
Query: 140 CPRGIDSNPGRKGGLAERLRVGTCTAYSNPPW 45
CPR + P R+ +A + +SNP W
Sbjct: 18 CPRVTPNAPPRRASVAVIIAFKESQDFSNPKW 49
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +2
Query: 128 SPEDTVESINIITD--HISSAIIRSSKEVDVED-SFHR 232
+P + S+ + D HIS I+R+ + +D+ FH+
Sbjct: 267 TPGSSTASVQKVVDCLHISKLIVRNEESIDIRSYVFHK 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,636
Number of Sequences: 5004
Number of extensions: 34972
Number of successful extensions: 123
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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