Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0289
(382 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_26176| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_53377| Best HMM Match : VRP1 (HMM E-Value=3.4) 27 3.9
SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3) 27 3.9
SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_41939| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29) 27 3.9
SB_41218| Best HMM Match : zf-C2H2 (HMM E-Value=0.68) 27 3.9
SB_33167| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 27 6.8
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 26 9.0
SB_9419| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13) 26 9.0
SB_29909| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.8) 26 9.0
>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 85 SRSANPPLRPGFESIPRGHRRIHKHHYRSH 174
S S++PPL +S R H H HH+ H
Sbjct: 96 SSSSSPPLSSSSQSSHRYHPLCHHHHHHLH 125
>SB_26176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 80 LEAAPPILPYGPDSNLSPEDTVESINIITDHISSAII 190
+ PP++P P S++ T +S + DHI ++I+
Sbjct: 211 IAVGPPVVPNVPSSSVPGPSTPKSSSRFFDHIKTSIV 247
>SB_53377| Best HMM Match : VRP1 (HMM E-Value=3.4)
Length = 335
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 87 PLRQSSLTARIRIYPPRTPSNP*TSLPITSLPRSLDLQKK 206
P++ + +TAR I PP S P TS P T P+S ++ K
Sbjct: 200 PIQPAVVTARPPIEPPTHSSAPFTSTPYT--PQSSQVKSK 237
>SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3)
Length = 173
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 133 RGHRRIHKHHYRSHLFRDH 189
R HRR H HH+R+H H
Sbjct: 130 RIHRRRHNHHHRNHQHHYH 148
>SB_53814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1301
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 257 ESLKS*ERGNPGLRSSSHAFKPDSDASSTTRSPLPPKR 370
ES+ S + G G ++F P ASST+ S L KR
Sbjct: 419 ESISSGDNGFGGSTCKDNSFSPKEMASSTSDSQLDSKR 456
>SB_41939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 159 SLPITSLPRSLDLQKKSMWRTASTASDYPP 248
S PI SLP++L LQ KS ++ S PP
Sbjct: 332 SQPIDSLPQTLKLQNKSYDHLHASPSPNPP 361
>SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29)
Length = 651
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 16 PSQPSHCYEDHGGLE*AVHVPTRSRSANPPLRPGFES 126
P+ SHCYED + + P RS+ PP + F S
Sbjct: 396 PALVSHCYEDQSCMN---NAPPRSQYCPPPSQNCFHS 429
>SB_41218| Best HMM Match : zf-C2H2 (HMM E-Value=0.68)
Length = 807
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 87 PLRQSSLTARIRIYPPRTPSNP*TSLPITSLPRSLDLQKK 206
P++ + +TAR I PP S P TS P T P+S ++ K
Sbjct: 668 PIQPAVVTARPPIEPPTHSSAPFTSTPYT--PQSSQVKSK 705
>SB_33167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 16 PSQPSHCYEDHGGLE*AVHVPTRSRSANPPLRPGFESIPRGHRRIHKHHYRSHL 177
P PS+ H E +P + A+P +RP + +P RR+ H+ + L
Sbjct: 280 PEPPSNPETAHVQPESPTQLPVEAE-ASPAIRPSEQKLPLALRRLRDHNNKGLL 332
>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 80 LEAAPPILPYGPDSNLSPEDTVESINIITDHISSAIIRSSKEVDVEDS 223
+ ++ PI Y +NLS + ++I I+TDH S +R D ED+
Sbjct: 877 ISSSIPIDIYNSKTNLSISEVNQAIEIVTDH--SDHLRGHDICDQEDT 922
>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3610
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 179 SAIIRSSKEVDVEDSFHRIRLSSGT*ESL 265
S + + ++D DSFHR +SSG E++
Sbjct: 2216 SVLTIKATDIDTVDSFHRFLISSGDEENM 2244
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 26.6 bits (56), Expect = 6.8
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 75 AYSKP-LRQSSLTARIRIYPPRTPSNP*TSLPITSLPRSL 191
AY+ P +R S T PR +P TSLP S PR L
Sbjct: 659 AYTSPRVRHSPRTPVPAYTSPRVHQSPRTSLPAYSTPRVL 698
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 124 SIPRGHRRIHKHHYRSHLFRDH 189
S P HR IH+ H+ H +R H
Sbjct: 84 SSPSTHRHIHRQHHHQH-YRHH 104
>SB_9419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -1
Query: 259 FLSSGG*SDAVEAVLHIDFF*RSNDRGRDVIGNDVYGFDGVLG 131
++S G D+V++ + + + ND + + +D YG D V+G
Sbjct: 76 YVSDNGNDDSVDSDSNGNDYVSDNDDDDNSVDSDTYGNDSVIG 118
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 82 RSRSANPPLRPG-FESIPRGHRRIHKHHYRSHLFRDH 189
++R P PG + + HR H HHY+ + + H
Sbjct: 929 QARPNMPGTLPGNYPESHKRHRHSHHHHYQHYQYNHH 965
>SB_58943| Best HMM Match : rve (HMM E-Value=6.1e-13)
Length = 1134
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +3
Query: 87 PLRQSSLTARIRIYPPRTPSNP*TSLPITSLPRSLDLQKKSMWRTASTASDYPPELRNL 263
P Q+ + R PP PSNP T+ P L ++ ++ + P LR L
Sbjct: 1065 PAGQTKVGREDRTMPPEPPSNPETAYLQPESPTQLPVEAEASPAIRPSEKKLPLALRRL 1123
>SB_29909| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.8)
Length = 441
Score = 26.2 bits (55), Expect = 9.0
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 38 TRTMVDWNKLCTCLLEAAPPILPYGPDS--NLSPEDTVESINI 160
T++ D K T L+++AP GPD+ L P T ES N+
Sbjct: 394 TQSFEDQTKPATKLIDSAPKNSQKGPDNVPQLDPYVTYESENL 436
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,205,829
Number of Sequences: 59808
Number of extensions: 285485
Number of successful extensions: 2887
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2882
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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