Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0289
(382 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY168346-1|AAN86964.1| 2480|Homo sapiens retinitis pigmentosa 1-... 30 2.2
AY168345-1|AAN86963.1| 2464|Homo sapiens retinitis pigmentosa 1-... 30 2.2
AY168344-1|AAN86962.1| 2448|Homo sapiens retinitis pigmentosa 1-... 30 2.2
AY168343-1|AAN86961.1| 2432|Homo sapiens retinitis pigmentosa 1-... 30 2.2
AY168342-1|AAN86960.1| 2416|Homo sapiens retinitis pigmentosa 1-... 30 2.2
AY168341-1|AAN86959.1| 2400|Homo sapiens retinitis pigmentosa 1-... 30 2.2
AJ491324-1|CAD36957.1| 2464|Homo sapiens retinitis pigmentosa 1-... 30 2.2
AC074091-7|AAX93198.1| 939|Homo sapiens unknown protein. 30 2.9
BC115376-1|AAI15377.1| 954|Homo sapiens C2orf16 protein protein. 29 3.8
AL834384-1|CAD39047.1| 845|Homo sapiens hypothetical protein pr... 29 3.8
AK024718-1|BAB14973.1| 196|Homo sapiens protein ( Homo sapiens ... 29 3.8
AJ310567-1|CAC83946.1| 1544|Homo sapiens phosphoinositide-bindin... 29 3.8
AK098191-1|BAC05256.1| 252|Homo sapiens protein ( Homo sapiens ... 29 6.6
AF275678-1|AAG24388.1| 418|Homo sapiens PP239 protein protein. 29 6.6
BC125196-1|AAI25197.1| 418|Homo sapiens transmembrane protease,... 28 8.7
BC125195-1|AAI25196.1| 418|Homo sapiens transmembrane protease,... 28 8.7
BC034364-1|AAH34364.1| 577|Homo sapiens MBTD1 protein protein. 28 8.7
AK124061-1|BAC85763.1| 430|Homo sapiens protein ( Homo sapiens ... 28 8.7
AB002134-1|BAA28691.1| 418|Homo sapiens airway trypsin-like pro... 28 8.7
>AY168346-1|AAN86964.1| 2480|Homo sapiens retinitis pigmentosa
1-like 1 protein protein.
Length = 2480
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 199 KRSRCGGQLPPHQTILRNLGIS*ELGTRQSGPT 297
+ S CG HQ+ R G S + GTRQ GPT
Sbjct: 866 RSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPT 898
>AY168345-1|AAN86963.1| 2464|Homo sapiens retinitis pigmentosa
1-like 1 protein protein.
Length = 2464
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 199 KRSRCGGQLPPHQTILRNLGIS*ELGTRQSGPT 297
+ S CG HQ+ R G S + GTRQ GPT
Sbjct: 866 RSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPT 898
>AY168344-1|AAN86962.1| 2448|Homo sapiens retinitis pigmentosa
1-like 1 protein protein.
Length = 2448
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 199 KRSRCGGQLPPHQTILRNLGIS*ELGTRQSGPT 297
+ S CG HQ+ R G S + GTRQ GPT
Sbjct: 866 RSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPT 898
>AY168343-1|AAN86961.1| 2432|Homo sapiens retinitis pigmentosa
1-like 1 protein protein.
Length = 2432
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 199 KRSRCGGQLPPHQTILRNLGIS*ELGTRQSGPT 297
+ S CG HQ+ R G S + GTRQ GPT
Sbjct: 866 RSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPT 898
>AY168342-1|AAN86960.1| 2416|Homo sapiens retinitis pigmentosa
1-like 1 protein protein.
Length = 2416
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 199 KRSRCGGQLPPHQTILRNLGIS*ELGTRQSGPT 297
+ S CG HQ+ R G S + GTRQ GPT
Sbjct: 866 RSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPT 898
>AY168341-1|AAN86959.1| 2400|Homo sapiens retinitis pigmentosa
1-like 1 protein protein.
Length = 2400
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 199 KRSRCGGQLPPHQTILRNLGIS*ELGTRQSGPT 297
+ S CG HQ+ R G S + GTRQ GPT
Sbjct: 866 RSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPT 898
>AJ491324-1|CAD36957.1| 2464|Homo sapiens retinitis pigmentosa
1-like protein 1 protein.
Length = 2464
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 199 KRSRCGGQLPPHQTILRNLGIS*ELGTRQSGPT 297
+ S CG HQ+ R G S + GTRQ GPT
Sbjct: 866 RSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPT 898
>AC074091-7|AAX93198.1| 939|Homo sapiens unknown protein.
Length = 939
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Frame = +1
Query: 10 RSPSQPSHCYED----HGGLE*AVHVPTRSRSANPPLRPGFESIPRGHRRIHKHHYRSHL 177
RSPSQ +HC H E +H P++ P R R HR + +RS
Sbjct: 562 RSPSQRNHCSPPERSCHSLSERGLHSPSQRSHRGPSQRRHHSPSERSHRSPSERSHRSSS 621
Query: 178 FRDH 189
R H
Sbjct: 622 ERRH 625
>BC115376-1|AAI15377.1| 954|Homo sapiens C2orf16 protein protein.
Length = 954
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Frame = +1
Query: 10 RSPSQPSHCYED----HGGLE*AVHVPTRSRSANPPLRPGFESIPRGHRRIHKHHYRSHL 177
RSPSQ +HC H E +H P++ P R R HR + +RS
Sbjct: 577 RSPSQRNHCSPPERSCHSLSERGLHSPSQRSHRGPSQRRHHSPSERSHRSPSERSHRSPS 636
Query: 178 FRDH 189
R H
Sbjct: 637 ERRH 640
>AL834384-1|CAD39047.1| 845|Homo sapiens hypothetical protein
protein.
Length = 845
Score = 29.5 bits (63), Expect = 3.8
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Frame = +1
Query: 10 RSPSQPSHCYED----HGGLE*AVHVPTRSRSANPPLRPGFESIPRGHRRIHKHHYRSHL 177
RSPSQ +HC H E +H P++ P R R HR + +RS
Sbjct: 468 RSPSQRNHCSPPERSCHSLSERGLHSPSQRSHRGPSQRRHHSPSERSHRSPSERSHRSPS 527
Query: 178 FRDH 189
R H
Sbjct: 528 ERRH 531
>AK024718-1|BAB14973.1| 196|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21065 fis, clone CAS01339. ).
Length = 196
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 14 RPHNPVTVTRTMVD--WNKLCTCLLEAAPPILPYGPDSNLSPEDTVESINIITDHISSAI 187
+P NP+T +++ +K T E PP P GP S SP+ + +SS I
Sbjct: 86 KPENPLTSQKSLDQPFLSKSSTLGQEERPPEPPPGPPSKSSPQARGSLEEQLLQELSSLI 145
Query: 188 IRSSK 202
+R +
Sbjct: 146 LRKGE 150
>AJ310567-1|CAC83946.1| 1544|Homo sapiens phosphoinositide-binding
proteins protein.
Length = 1544
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 14 RPHNPVTVTRTMVD--WNKLCTCLLEAAPPILPYGPDSNLSPEDTVESINIITDHISSAI 187
+P NP+T +++ +K T E PP P GP S SP+ + +SS I
Sbjct: 1434 KPENPLTSQKSLDQPFLSKSSTLGQEERPPEPPPGPPSKSSPQARGSLEEQLLQELSSLI 1493
Query: 188 IRSSK 202
+R +
Sbjct: 1494 LRKGE 1498
>AK098191-1|BAC05256.1| 252|Homo sapiens protein ( Homo sapiens
cDNA FLJ40872 fis, clone TUTER2000283, highly similar to
Homo sapiens transformer-2-beta (SFRS10) gene. ).
Length = 252
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +1
Query: 1 YAARSPSQPSHCYEDHGGLE*AVHVPTRSRSANPPLRPGFESIPRGHRRIHKHHY 165
Y R S HG + A H P +SRS + R S R +RR H H +
Sbjct: 9 YGERESRSASRSGSAHGSGKSARHTPAKSRSRS-HRRSRSRSYSRDYRRRHSHSH 62
>AF275678-1|AAG24388.1| 418|Homo sapiens PP239 protein protein.
Length = 418
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/33 (54%), Positives = 20/33 (60%)
Frame = +1
Query: 73 VPTRSRSANPPLRPGFESIPRGHRRIHKHHYRS 171
V TRSRS + R G ES R HRR + HYRS
Sbjct: 76 VVTRSRSWDR--RHGSESRSRDHRREDRVHYRS 106
>BC125196-1|AAI25197.1| 418|Homo sapiens transmembrane protease,
serine 11D protein.
Length = 418
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 213 WRTASTASDYPPELRNLLRVRNAAIRAYDRLPTHSNRIRMRRLQREV 353
W S S P+LR +RVRN I + TH N I + RL+ V
Sbjct: 238 WIATSGISTTFPKLR--MRVRNILIHNNYKSATHENDIALVRLENSV 282
>BC125195-1|AAI25196.1| 418|Homo sapiens transmembrane protease,
serine 11D protein.
Length = 418
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 213 WRTASTASDYPPELRNLLRVRNAAIRAYDRLPTHSNRIRMRRLQREV 353
W S S P+LR +RVRN I + TH N I + RL+ V
Sbjct: 238 WIATSGISTTFPKLR--MRVRNILIHNNYKSATHENDIALVRLENSV 282
>BC034364-1|AAH34364.1| 577|Homo sapiens MBTD1 protein protein.
Length = 577
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 3 CSSVALTTQSLLRGPWWIGISCARAYSKPLRQSSLTARIRIYPP 134
C V + + + +SC+R+YS +++S+ AR++ PP
Sbjct: 57 CGMVGVRDAFYSKTKRFCSVSCSRSYSSNSKKASILARLQGKPP 100
>AK124061-1|BAC85763.1| 430|Homo sapiens protein ( Homo sapiens
cDNA FLJ42067 fis, clone SYNOV2007965, moderately
similar to Homo sapiens mRNA for H-l(3)mbt-like protein.
).
Length = 430
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 3 CSSVALTTQSLLRGPWWIGISCARAYSKPLRQSSLTARIRIYPP 134
C V + + + +SC+R+YS +++S+ AR++ PP
Sbjct: 57 CGMVGVRDAFYSKTKRFCSVSCSRSYSSNSKKASILARLQGKPP 100
>AB002134-1|BAA28691.1| 418|Homo sapiens airway trypsin-like
protease protein.
Length = 418
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 213 WRTASTASDYPPELRNLLRVRNAAIRAYDRLPTHSNRIRMRRLQREV 353
W S S P+LR +RVRN I + TH N I + RL+ V
Sbjct: 238 WIATSGISTTFPKLR--MRVRNILIHNNYKSATHENDIALVRLENSV 282
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,653,607
Number of Sequences: 237096
Number of extensions: 1353218
Number of successful extensions: 4096
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4093
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2526356360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -