Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0289
(382 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53147-4|AAA96115.1| 668|Caenorhabditis elegans Temporarily ass... 31 0.21
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr... 30 0.49
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr... 30 0.49
U50067-5|AAY86219.1| 306|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p... 27 3.4
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p... 27 3.4
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr... 27 3.4
AY390540-1|AAQ94952.1| 405|Caenorhabditis elegans SMA-9 class I... 27 3.4
AY390539-1|AAQ94951.1| 465|Caenorhabditis elegans SMA-9 class I... 27 3.4
AY390538-1|AAQ94950.1| 591|Caenorhabditis elegans SMA-9 class I... 27 3.4
Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical pr... 27 4.5
U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical pr... 27 4.5
AL023844-6|CAA19532.1| 551|Caenorhabditis elegans Hypothetical ... 27 4.5
Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr... 27 6.0
U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical pr... 27 6.0
>U53147-4|AAA96115.1| 668|Caenorhabditis elegans Temporarily
assigned gene nameprotein 117 protein.
Length = 668
Score = 31.5 bits (68), Expect = 0.21
Identities = 23/96 (23%), Positives = 43/96 (44%)
Frame = +2
Query: 77 LLEAAPPILPYGPDSNLSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLSSGT* 256
+LE++ ++ + ++ + S+ I +SS R S + D F + +
Sbjct: 111 VLESSEVLIDEENKDSRQLDEVIISVERIASKLSSMQGRESDVAMLRDFFAAPPIQAAIE 170
Query: 257 ESLKS*ERGNPGLRSSSHAFKPDSDASSTTRSPLPP 364
+++K + G G SS D+SS T SP+PP
Sbjct: 171 QTVK--QNGKCGTTSSGIGTDSGGDSSSCTSSPIPP 204
>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical
protein ZK688.5b protein.
Length = 1595
Score = 30.3 bits (65), Expect = 0.49
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 56 WNKLCTCLLEAAPPILPYGPDSNLSPEDTVESINIITDHISSAI 187
WN+ CT L PP+ P+ P L + ++ + + TDH+S I
Sbjct: 255 WNQNCTSLSVELPPVSPHIPSPAL---EKLDFLCLWTDHLSRFI 295
>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical
protein ZK688.5a protein.
Length = 1620
Score = 30.3 bits (65), Expect = 0.49
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 56 WNKLCTCLLEAAPPILPYGPDSNLSPEDTVESINIITDHISSAI 187
WN+ CT L PP+ P+ P L + ++ + + TDH+S I
Sbjct: 255 WNQNCTSLSVELPPVSPHIPSPAL---EKLDFLCLWTDHLSRFI 295
>U50067-5|AAY86219.1| 306|Caenorhabditis elegans Hypothetical
protein C18F3.4 protein.
Length = 306
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 120 RIYPPRTPSNP*TSLPITSLPRSLDLQKKSMWRTASTASDYPPEL 254
++ PPR SNP +SLP S ++ + W ++ ++D P+L
Sbjct: 88 KLSPPRRQSNPHSSLPAIS-SSTVKNEPTDSWTPSALSNDPTPDL 131
>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
protein T05A10.1a protein.
Length = 2066
Score = 27.5 bits (58), Expect = 3.4
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +3
Query: 60 ISCARAYSKPLRQSSLTARIRIYPPRTPSNP*TSLPITSLPRSLDLQKKSMWRTASTASD 239
+SC +++ + T +++P PS+P S S+ +KK++ +A+ A+D
Sbjct: 1763 VSCVSSFNNSTMSPNPTVVPQVFPTPNPSSPLES-------SSMQFRKKAVLDSATHAND 1815
Query: 240 YPPELRNLLRV 272
P R +LR+
Sbjct: 1816 MP---RTILRI 1823
>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
protein T05A10.1d protein.
Length = 2134
Score = 27.5 bits (58), Expect = 3.4
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +3
Query: 60 ISCARAYSKPLRQSSLTARIRIYPPRTPSNP*TSLPITSLPRSLDLQKKSMWRTASTASD 239
+SC +++ + T +++P PS+P S S+ +KK++ +A+ A+D
Sbjct: 1831 VSCVSSFNNSTMSPNPTVVPQVFPTPNPSSPLES-------SSMQFRKKAVLDSATHAND 1883
Query: 240 YPPELRNLLRV 272
P R +LR+
Sbjct: 1884 MP---RTILRI 1891
>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical protein
T05A10.1c protein.
Length = 1692
Score = 27.5 bits (58), Expect = 3.4
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +3
Query: 60 ISCARAYSKPLRQSSLTARIRIYPPRTPSNP*TSLPITSLPRSLDLQKKSMWRTASTASD 239
+SC +++ + T +++P PS+P S S+ +KK++ +A+ A+D
Sbjct: 1389 VSCVSSFNNSTMSPNPTVVPQVFPTPNPSSPLES-------SSMQFRKKAVLDSATHAND 1441
Query: 240 YPPELRNLLRV 272
P R +LR+
Sbjct: 1442 MP---RTILRI 1449
>AY390540-1|AAQ94952.1| 405|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 405
Score = 27.5 bits (58), Expect = 3.4
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +3
Query: 60 ISCARAYSKPLRQSSLTARIRIYPPRTPSNP*TSLPITSLPRSLDLQKKSMWRTASTASD 239
+SC +++ + T +++P PS+P S S+ +KK++ +A+ A+D
Sbjct: 102 VSCVSSFNNSTMSPNPTVVPQVFPTPNPSSPLES-------SSMQFRKKAVLDSATHAND 154
Query: 240 YPPELRNLLRV 272
P R +LR+
Sbjct: 155 MP---RTILRI 162
>AY390539-1|AAQ94951.1| 465|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 465
Score = 27.5 bits (58), Expect = 3.4
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +3
Query: 60 ISCARAYSKPLRQSSLTARIRIYPPRTPSNP*TSLPITSLPRSLDLQKKSMWRTASTASD 239
+SC +++ + T +++P PS+P S S+ +KK++ +A+ A+D
Sbjct: 162 VSCVSSFNNSTMSPNPTVVPQVFPTPNPSSPLES-------SSMQFRKKAVLDSATHAND 214
Query: 240 YPPELRNLLRV 272
P R +LR+
Sbjct: 215 MP---RTILRI 222
>AY390538-1|AAQ94950.1| 591|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 591
Score = 27.5 bits (58), Expect = 3.4
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +3
Query: 60 ISCARAYSKPLRQSSLTARIRIYPPRTPSNP*TSLPITSLPRSLDLQKKSMWRTASTASD 239
+SC +++ + T +++P PS+P S S+ +KK++ +A+ A+D
Sbjct: 288 VSCVSSFNNSTMSPNPTVVPQVFPTPNPSSPLES-------SSMQFRKKAVLDSATHAND 340
Query: 240 YPPELRNLLRV 272
P R +LR+
Sbjct: 341 MP---RTILRI 348
>Z81544-7|CAB04432.2| 551|Caenorhabditis elegans Hypothetical
protein F49C5.3 protein.
Length = 551
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 128 IDSNPGRKGGLAERLRVGTCTAYSN 54
IDS GR ++LR GTC + SN
Sbjct: 167 IDSKAGRTAYRKQKLREGTCCSQSN 191
>U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical
protein C10H11.1 protein.
Length = 918
Score = 27.1 bits (57), Expect = 4.5
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +3
Query: 144 SNP*TSLPITSLPRSLDLQKKSMWRTASTASDYPPELRNLLRVRNAAIRAYDRLPTHSNR 323
SNP TS +SLP+ ++ + + +S P L+ + R R + D+ T R
Sbjct: 108 SNPTTSGASSSLPKISEITASNDIDLDAISSKATPVLKTVTRPRAPNRKKSDKSSTFDER 167
Query: 324 IRM 332
IR+
Sbjct: 168 IRL 170
>AL023844-6|CAA19532.1| 551|Caenorhabditis elegans Hypothetical
protein Y48A6B.8 protein.
Length = 551
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 128 IDSNPGRKGGLAERLRVGTCTAYSN 54
IDS GR ++LR GTC + SN
Sbjct: 167 IDSKAGRTAYRKQKLREGTCCSQSN 191
>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical
protein C10C6.6 protein.
Length = 1178
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 281 GNPGLRSSSHAFKPDSDASSTTRSPLPPKRRA 376
G PG +++A + D+ + R+PLPP A
Sbjct: 878 GAPGAPPAANAARRDAPPGARARAPLPPMANA 909
>U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical
protein F49E10.5 protein.
Length = 727
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 10 RSPSQPSHCYEDHGGLE*AVHVPTRSRSANPPLRPGFESIP 132
R P +HC + + + R+ SA+P L GF ++P
Sbjct: 494 RCPQDLTHCINKEAVMRNSNPINRRTSSAHPLLNMGFPTLP 534
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,424,039
Number of Sequences: 27780
Number of extensions: 204554
Number of successful extensions: 758
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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