Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0287
(458 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 186 1e-48
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 31 0.11
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 29 0.45
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 29 0.45
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 29 0.45
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 29 0.45
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 28 0.79
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 1.8
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 26 2.4
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 3.2
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 5.6
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 25 7.3
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 25 7.3
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 24 9.7
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 186 bits (453), Expect = 1e-48
Identities = 81/116 (69%), Positives = 101/116 (87%)
Frame = +1
Query: 106 PVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYN 285
PVV++ GDEMTR+IW +I+EKL+LP++DI+L YDLG+E RDKT+DQ+T+D A+AI K +
Sbjct: 19 PVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAILKND 78
Query: 286 VGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGW 453
VGIKCATITPDE RV+E+ LKKMWKSPNGTIRNIL GTVFRE I+ KNIP+ + GW
Sbjct: 79 VGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGW 134
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 30.7 bits (66), Expect = 0.11
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 118 ILGDEMTRIIWDLIKEKLILPFLDIELHVYDL-GMENRDKTDDQVTIDCAEAIKKYNVGI 294
I GD + R + + E + IE D+ GME +K+ + +++K+ VG+
Sbjct: 26 IPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSLKRNKVGL 85
Query: 295 KCATITPDEK 324
K TP EK
Sbjct: 86 KGILFTPFEK 95
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.7 bits (61), Expect = 0.45
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = -1
Query: 191 MSKKGRISFSLIRSQIILVISSPRMSTTGPAFILDILYLSTSMNKRVLLRLVGTSY 24
++K+ +I FS I+L I ++ + + +++ ST +NK+++L + TS+
Sbjct: 141 LTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETF--STRLNKKIILNTIVTSF 194
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.7 bits (61), Expect = 0.45
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = -1
Query: 191 MSKKGRISFSLIRSQIILVISSPRMSTTGPAFILDILYLSTSMNKRVLLRLVGTSY 24
++K+ +I FS I+L I ++ + + +++ ST +NK+++L + TS+
Sbjct: 141 LTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETF--STRLNKKIILNTIVTSF 194
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.7 bits (61), Expect = 0.45
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = -1
Query: 191 MSKKGRISFSLIRSQIILVISSPRMSTTGPAFILDILYLSTSMNKRVLLRLVGTSY 24
++K+ +I FS I+L I ++ + + +++ ST +NK+++L + TS+
Sbjct: 141 LTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETF--STRLNKKIILNTIVTSF 194
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.7 bits (61), Expect = 0.45
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = -1
Query: 191 MSKKGRISFSLIRSQIILVISSPRMSTTGPAFILDILYLSTSMNKRVLLRLVGTSY 24
++K+ +I FS I+L I ++ + + +++ ST +NK+++L + TS+
Sbjct: 141 LTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETF--STRLNKKIILNTIVTSF 194
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 0.79
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 31 VPTNLKSTRLFIEVERYNMSKI--KAGPVVDILGDEMTRIIWDLIKEKLILPFLDIELHV 204
VPTN T L + E ++K K V +G E+ + W + LI +D L +
Sbjct: 95 VPTNTPITTLADDAEELALAKEYWKVKIVCRSMGSEIYDLCWSVDSNFLIAGAMDNSLRL 154
Query: 205 YD 210
YD
Sbjct: 155 YD 156
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.6 bits (56), Expect = 1.8
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -2
Query: 139 WSFHHQGCQQQVQPLF*TYCIFL 71
W H+G V P F YC FL
Sbjct: 721 WEIRHRGAFTSVYPCFIEYCSFL 743
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 2.4
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 197 NSMSKKG-RISFSLIRSQIILVISSPRMSTTGPAFILDILYLSTSMNKRVL 48
N + K G + SL+++ + +S ST AFI + + STS N VL
Sbjct: 9 NDLKKSGFMLRQSLLKTSVSNFLSLNASSTMSRAFIRNPKFYSTSSNDTVL 59
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.8 bits (54), Expect = 3.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 166 KLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIK 276
+LI+ F D ELH + N+ + D AEA+K
Sbjct: 400 RLIMKFSDSELHTFLFHCVNKIVANTTENSDSAEAVK 436
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.0 bits (52), Expect = 5.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 408 PENSTTKNITDGPIRAFPHFLQFKFFNSLLIRSYGRTFDAHI 283
PEN TT ++ GP F + + L++ GRTF I
Sbjct: 598 PENITTILVSQGPAGVPFEFTHKRKDDENLLKDLGRTFQNFI 639
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 24.6 bits (51), Expect = 7.3
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 202 VYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKLKKM 354
VYD +D + D K N + A +T +EKRVE + K+M
Sbjct: 45 VYDKLYGEQDLSKDLENTLNVSGTKDSNAEEQPAKLTKEEKRVEREEAKRM 95
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 441 KSRYILANNSLPENSTTKNITDG 373
+++ I NNSLP +T ITDG
Sbjct: 394 RTKSIEENNSLPPIVSTNGITDG 416
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 24.2 bits (50), Expect = 9.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 79 YNMSKIKAGPVVDILGDEMTRIIWDLIKEKLIL 177
Y+ A V+ +GD+ T IIW L E IL
Sbjct: 146 YSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,996,242
Number of Sequences: 5004
Number of extensions: 40698
Number of successful extensions: 113
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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