Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0287
         (458 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)                     162   1e-40
SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)               159   1e-39
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)            28   4.3  
SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.3  
SB_32988| Best HMM Match : F5_F8_type_C (HMM E-Value=2e-25)            27   5.6  
SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)         27   7.5  
SB_39815| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_20069| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  

>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
          Length = 644

 Score =  162 bits (394), Expect = 1e-40
 Identities = 70/97 (72%), Positives = 87/97 (89%)
 Frame = +1

Query: 166 KLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKL 345
           +LI P+LD+++  +DLG+E+RD T+D+VT++ AEAI+K++VGIKCATITPDE RVEEFKL
Sbjct: 19  QLISPYLDLDIKYFDLGLEHRDATNDKVTVEAAEAIRKHHVGIKCATITPDEARVEEFKL 78

Query: 346 KKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWD 456
           KKMWKSPNGTIRNILGGTVFR  IICK +PRLV GW+
Sbjct: 79  KKMWKSPNGTIRNILGGTVFRAPIICKTVPRLVPGWE 115


>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
          Length = 296

 Score =  159 bits (386), Expect = 1e-39
 Identities = 74/88 (84%), Positives = 80/88 (90%)
 Frame = +1

Query: 190 IELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPN 369
           +EL  YDL +ENRD T+DQVTID A AIK+ +VGIKCATITPDEKRVEEFKLKKMWKSPN
Sbjct: 1   MELKSYDLSIENRDATNDQVTIDAAAAIKQCHVGIKCATITPDEKRVEEFKLKKMWKSPN 60

Query: 370 GTIRNILGGTVFREAIICKNIPRLVTGW 453
           GTIRNILGGTVFREAIICKNIPRLV+ W
Sbjct: 61  GTIRNILGGTVFREAIICKNIPRLVSPW 88


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +1

Query: 214 GMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILG 393
           G+ +RD   D + +     +K  + G  CATITP++ +         W +P    R   G
Sbjct: 336 GVIHRDIKSDNILLGMDGQVKLTDFGF-CATITPEQNKRSTMVGTPYWMAPEVVTRKQYG 394

Query: 394 GTV 402
             V
Sbjct: 395 PRV 397


>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1743

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
 Frame = +1

Query: 142 IIWDLIKEKLILPFLDIELHV-----YDLGMEN-RDKTDDQVTIDCAEAIKKYNVGIKCA 303
           ++  + K+K +LP++ +E+ +      DL  +  R  T++ V +    A+K     ++ +
Sbjct: 574 VVCRVFKDKHLLPWIGVEIALNVLRNVDLTRDELRCITNEDVPLATVSAVKMVQFNLQKS 633

Query: 304 TITPDEKRVEE 336
            + P+E+RV +
Sbjct: 634 DVEPNEQRVRQ 644


>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
          Length = 642

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 169 LILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCA 303
           L+L  L +E+    LG  N+DK    +T D    IK+Y    K A
Sbjct: 442 LLLIVLGLEIAAAVLGYINKDKIQSDLTDDIIRNIKEYPKNNKAA 486


>SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1144

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/71 (22%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
 Frame = +1

Query: 142 IIWDLIKEKLILPFLDIELHV-----YDLGMEN-RDKTDDQVTIDCAEAIKKYNVGIKCA 303
           ++  + K+K +LP++ +E+ +      DL  ++ R  T++ V +    A+K     ++ +
Sbjct: 690 VVCRVFKDKHLLPWIGVEIALNVLRNVDLTRDDLRWITNEDVPLATVSAVKMVQFNLQKS 749

Query: 304 TITPDEKRVEE 336
            + P+E+RV +
Sbjct: 750 DVEPNEQRVRQ 760


>SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1364

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
 Frame = +1

Query: 142 IIWDLIKEKLILPFLDIELHV-----YDLGMEN-RDKTDDQVTIDCAEAIKKYNVGIKCA 303
           ++  + K+K +LP++ +E+ +      DL  +  R  T++ V +    A+K     ++ +
Sbjct: 688 VVCRVFKDKHLLPWIGVEIALNVLRNVDLTRDELRCITNEDVPLATVSAVKMVQFNLQKS 747

Query: 304 TITPDEKRVEE 336
            + P+E+RV +
Sbjct: 748 DVKPNEQRVRQ 758


>SB_32988| Best HMM Match : F5_F8_type_C (HMM E-Value=2e-25)
          Length = 180

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
 Frame = +1

Query: 136 TRIIWDLIKEKLILPFLDIELH-----VYDLGMENRDKTDDQVT 252
           TR I  ++KE  +LP + +EL+     +  LGME +   D Q+T
Sbjct: 1   TRYIRFVVKEWNVLPAIRVELYGCEACLSPLGMETKSIADSQIT 44


>SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
          Length = 1414

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 73  ERYNMSKIKAGPVVDILGDEMTRIIWDLIKEKLILPFLDIELHV 204
           + Y    +K    V+ + DEM   + D+I +  +L FL I L V
Sbjct: 42  DTYEKGALKKDHEVEEIDDEMRDCLNDIINDNCLLSFLLIRLRV 85


>SB_39815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 262 AEAIKKYNVGIKCATITPDEKRVEE 336
           +E  KKY   I+C  +  +E+RV E
Sbjct: 659 SEKFKKYRRSIRCVNVRVEERRVNE 683


>SB_20069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 151 DLIKEKLILPFLDIELHVYDLGMENRDKTDDQVT 252
           D++  KL+   L+ + HVYDL  ++ +K    VT
Sbjct: 159 DIMMNKLVATTLESKFHVYDLRTQHPEKGFASVT 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,518,862
Number of Sequences: 59808
Number of extensions: 291648
Number of successful extensions: 717
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)