Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0281
         (452 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             198   2e-51
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         34   0.048
SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)         33   0.084
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        28   4.2  
SB_28252| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  198 bits (483), Expect = 2e-51
 Identities = 90/126 (71%), Positives = 106/126 (84%), Gaps = 12/126 (9%)
 Frame = +3

Query: 3   KDMRHHKNVGLGFKTP------------REAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 146
           KD+R  +NVGLGFKTP            REAIEGTYIDKKCPFTGNVSIRGRILTG+ + 
Sbjct: 30  KDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIEGTYIDKKCPFTGNVSIRGRILTGICRS 89

Query: 147 MKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVR 326
           MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++ H SPCFRD+ +GD++T+G+CRPLSKTVR
Sbjct: 90  MKMKRTIIIRRDYLHYIKKYNRFEKRHKNLAAHCSPCFRDIALGDLITVGQCRPLSKTVR 149

Query: 327 FNVLKV 344
           FNVLKV
Sbjct: 150 FNVLKV 155


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 34.3 bits (75), Expect = 0.048
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +3

Query: 276 GDIVTIGECRPLSKTVRFNVLKV 344
           GD+V I ECRPLSK  +FNV ++
Sbjct: 29  GDVVRIKECRPLSKMKKFNVEEI 51


>SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)
          Length = 208

 Score = 33.5 bits (73), Expect = 0.084
 Identities = 22/83 (26%), Positives = 39/83 (46%)
 Frame = +3

Query: 96  TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 275
           T   + R ++  G+V   KM +TI +  +     P Y +   +   +  H      +  +
Sbjct: 5   TAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDEN--NEAGM 62

Query: 276 GDIVTIGECRPLSKTVRFNVLKV 344
           GD V I E RPLS T R+ ++++
Sbjct: 63  GDRVRIMETRPLSATKRWRLVEI 85


>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 78  QCRYPQSPLWEF*SLNQHSYGDACP 4
           +C   QS LWE  SL QH Y +  P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 123 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 260
           I+  VV K K  +  VI RD+  Y     ++ +R     VH SP F
Sbjct: 64  IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109


>SB_28252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +3

Query: 192 YLPKYNRFE--KRHRNMSVHLSPCF 260
           Y  K++RF    ++RN S+H+SP F
Sbjct: 33  YSSKFHRFNIFHKYRNFSLHISPVF 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,501,947
Number of Sequences: 59808
Number of extensions: 248584
Number of successful extensions: 651
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)