Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0281
         (452 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   185   1e-47
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    30   0.69 
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    27   6.4  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  185 bits (451), Expect = 1e-47
 Identities = 83/114 (72%), Positives = 95/114 (83%)
 Frame = +3

Query: 3   KDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRD 182
           K  R+ + VGLGFK PR+A+EGTYIDKKCP+ GNV IRG ILTGVV K KM RTIV+RRD
Sbjct: 29  KTPRYIREVGLGFKAPRDAVEGTYIDKKCPWAGNVPIRGMILTGVVLKNKMTRTIVVRRD 88

Query: 183 YLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 344
           YLHY+ KY R+EKRH+N+  H SP FRD+  GD+VTIGECRPLSKTVRFNVLKV
Sbjct: 89  YLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPGDLVTIGECRPLSKTVRFNVLKV 142


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 338 QNIESNCFGQRSAFADRYNITNLHVPEARRQMYGH 234
           +++E  CF Q   F D +N+T L + +  R MY H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 122 HPHRRRSEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALL 259
           +P +  S++ED E+  DP  LP     +     +  E +R+ +ALL
Sbjct: 193 NPAQYGSQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 113 PRAHPHRRRSEDEDAENYRDPPR 181
           P A P RRR +D   +  R PPR
Sbjct: 87  PSASPPRRRRDDSPRKRSRSPPR 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,870,823
Number of Sequences: 27780
Number of extensions: 186654
Number of successful extensions: 516
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)