Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0281
(452 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 183 6e-47
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 177 2e-45
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 174 2e-44
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 39 0.002
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si... 37 0.007
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ... 31 0.28
At4g26980.1 68417.m03882 expressed protein 27 4.5
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit... 27 4.5
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 27 5.9
At2g24070.1 68415.m02875 expressed protein contains Pfam domain,... 27 5.9
At1g17210.1 68414.m02097 expressed protein distantly related to ... 27 5.9
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ... 27 7.8
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 27 7.8
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 183 bits (445), Expect = 6e-47
Identities = 83/111 (74%), Positives = 95/111 (85%)
Frame = +3
Query: 12 RHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLH 191
R KN+GLGFKTPREAIEGTYID+KCPFTG VSIRGRIL+G KMQRTI++RRDYLH
Sbjct: 34 RFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLH 93
Query: 192 YLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 344
++ KY R+EKRH N+ H+SPCFR V+ GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 94 FVKKYRRYEKRHSNIPAHVSPCFR-VKEGDRVTIGQCRPLSKTVRFNVLKV 143
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 177 bits (432), Expect = 2e-45
Identities = 79/111 (71%), Positives = 92/111 (82%)
Frame = +3
Query: 12 RHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLH 191
R KN+GLGFKTPREAI+G Y+DKKCPFTG VSIRGRIL G KMQRTI++RRDYLH
Sbjct: 34 RFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLH 93
Query: 192 YLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 344
++ KY R+EKRH N+ H+SPCFR V+ GD + IG+CRPLSKTVRFNVLKV
Sbjct: 94 FVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHIIIGQCRPLSKTVRFNVLKV 143
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 174 bits (424), Expect = 2e-44
Identities = 79/111 (71%), Positives = 91/111 (81%)
Frame = +3
Query: 12 RHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLH 191
R KN+GLGFKTPREAI+G YID KCPFTG VSIRGRIL G KMQRTI++RR+YLH
Sbjct: 34 RFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLH 93
Query: 192 YLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 344
++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 94 FVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 143
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 132 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 308
G V KMQ+++V+ D L + YNR+ KR H +D IGD V + RP
Sbjct: 6 GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62
Query: 309 LSKTVRFNVLKV 344
LSK + V ++
Sbjct: 63 LSKNKHWIVAEI 74
>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GB:Y08858 from
[Nicotiana plumbaginifolia]
Length = 105
Score = 36.7 bits (81), Expect = 0.007
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = +3
Query: 120 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 299
+ + G V KMQ ++V+ D L + YNR+ KR H IGD V +
Sbjct: 2 KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59
Query: 300 CRPLSK 317
RPLSK
Sbjct: 60 SRPLSK 65
>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
CS17 (RPS17) identical to 30S ribosomal protein S17,
chloroplast precursor GB:P16180 [Arabidopsis thaliana]
Length = 149
Score = 31.5 bits (68), Expect = 0.28
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +3
Query: 120 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 299
+ + G V +T+ + L PKY R + + H P ++GD+V + +
Sbjct: 51 KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108
Query: 300 CRPLSKTVRFNVLKV 344
RP+SKT F L V
Sbjct: 109 SRPISKTKSFVALPV 123
>At4g26980.1 68417.m03882 expressed protein
Length = 343
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 42 KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 146
+ PREA+ +D+ PF ++ + ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274
>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 206
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 117 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 233
G+++ GVV+ +R + + R + L NRF RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 27.1 bits (57), Expect = 5.9
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Frame = +2
Query: 47 SQRGD*GYLH*QEVSLHWQRFD-PRAHPH-----RRRSEDEDAENYRDPPRLPSLPTQIQ 208
S+R D G +H EVS W+R + P++ RRRS D R P LP +
Sbjct: 666 SKRHDPGKVHSVEVSERWERREQPKSRQRDLREKRRRSRSRDHGQDRQKRSSP-LPRAEK 724
Query: 209 *VRETAQEHVRTFVALLQGRGDW*YCND 292
+ H +++ R +CND
Sbjct: 725 ATSRHKRNHEERSENVVKDRSGKHHCND 752
>At2g24070.1 68415.m02875 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 609
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 58 RLRVPTLTRSVPSLATFRSAGASSPASF 141
R PT TR PS R+A +SSP SF
Sbjct: 52 RSPTPTKTRRCPSPIVTRTAPSSSPESF 79
>At1g17210.1 68414.m02097 expressed protein distantly related to
dentin phosphoryn [Homo sapiens] (GI:4322670)
Length = 958
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +1
Query: 37 ASKLPERRLRVPTLTRSVPSLATFRSAGASSPA 135
AS P R R + S P A SAGASSPA
Sbjct: 27 ASATPVDRFRRRARSPSPPQTAAASSAGASSPA 59
>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}, SP|P40991 Nucleolar protein NOP2
{Saccharomyces cerevisiae}; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 682
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 110 DPRAHPHRRRSEDEDAENYRDPPRLPSLPTQIQ 208
+P R +E+E E R PP LP L T+I+
Sbjct: 187 EPEHDAFRLPTEEELEEEARGPPDLPLLKTRIE 219
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains Pfam
profile PF00730: HhH-GPD superfamily base excision DNA
repair protein
Length = 1729
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 140 SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALLQG 265
S+ EDA DP +P++ I+ T +EH+ + L +G
Sbjct: 1470 SDIEDAYYNEDPDEIPTIKLNIEQFGMTLREHMERNMELQEG 1511
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,269,797
Number of Sequences: 28952
Number of extensions: 171845
Number of successful extensions: 416
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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