Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0279
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|...   100   3e-22
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    27   2.4  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.4  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   4.2  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    26   4.2  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   4.2  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   9.6  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    25   9.6  

>SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit
           Med31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 99.5 bits (237), Expect = 3e-22
 Identities = 38/74 (51%), Positives = 58/74 (78%)
 Frame = +2

Query: 314 NRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREPEYARYLKYPMCL 493
           ++ RF++ELEFVQ L+NP Y++FLAQ  Y +++ F+ YL+Y++YWREPEY +++ YP CL
Sbjct: 13  DKSRFEIELEFVQMLSNPWYLNFLAQHKYFEDEAFLQYLEYMEYWREPEYVKFIIYPTCL 72

Query: 494 HFLELLQHEAFRRE 535
           H L LL++  FR +
Sbjct: 73  HMLTLLKNPQFRND 86


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 121 SHIYIRIK*TVLCNLKICYYFGHRFVETYTTD 216
           +HI +R+   +L  L IC++ G  F   YTT+
Sbjct: 153 THIVVRV---LLLLLSICFFVGAAFYTAYTTN 181


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 121 SHIYIRIK*TVLCNLKICYYFGHRFVETYTTD 216
           +HI +R+   +L  L IC++ G  F   YTT+
Sbjct: 153 THIVVRV---LLLLLSICFFVGAAFYTAYTTN 181


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 284 GKVMPETEEQNRIRFQVELEFVQCL 358
           G V+P+ E +NRIR   E   + CL
Sbjct: 81  GYVIPKHEIRNRIRLLSEASLISCL 105


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 276 ILNPKYMQLEYLNYSKLNKLVSGVRLNKSMTKIITYFQVTQDSSFYPY 133
           + NPK ++ + +  S L  ++  VR NK+    I  F+V+ D +F  Y
Sbjct: 428 LANPKTLEFQVVRSSLLPGILKTVRENKNHALPIKIFEVS-DVAFCDY 474


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 232  KIKQVGQWCTSQQIYDQNNNIFSGYTRQFILSLYKYVIFKILSLLKCYTVLSKL 71
            KIK +   C  Q I  +  NI SG+   F +  Y   I  +L L    +V+S L
Sbjct: 1279 KIKDLVLRCIDQMIKARYQNIRSGWRTIFHILAYASKIENLLVLQCAISVVSSL 1332


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 338 LEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWRE 454
           LE+ +C+A    +  LA  GY     ++  L  L Y RE
Sbjct: 471 LEYNECVAAAQLLDHLAACGYFFFSKYIARLASLGYLRE 509


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 333 WNLNLCSA*QIQITFTFW 386
           WNL  CSA  + +  +FW
Sbjct: 390 WNLRKCSAAALDVLSSFW 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,134
Number of Sequences: 5004
Number of extensions: 47286
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)