Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0279
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0949 - 21759821-21759833,21759985-21760301,21760650-217607... 110 8e-25
07_01_0461 + 3492302-3492413,3492868-3492964,3493053-3493131,349... 109 1e-24
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 31 0.79
01_05_0471 + 22535477-22535609,22535714-22535808,22535929-225360... 30 1.4
06_01_0641 - 4652380-4653771,4653850-4654521,4654536-4654707,465... 29 2.4
02_02_0081 - 6608901-6609680,6610380-6610808,6610893-6610994,661... 29 2.4
01_01_0492 - 3632812-3633189,3633563-3633709,3633906-3633995,363... 29 3.2
04_04_0442 - 25229186-25229568,25229740-25232671 28 5.6
02_01_0395 + 2869748-2870045,2870450-2870571,2871700-2871777,287... 28 5.6
01_07_0050 - 40751994-40752086,40752193-40752300,40752501-407526... 28 5.6
01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334... 28 5.6
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 27 7.4
>10_08_0949 -
21759821-21759833,21759985-21760301,21760650-21760728,
21760816-21760912,21761305-21761410
Length = 203
Score = 110 bits (264), Expect = 8e-25
Identities = 47/85 (55%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Frame = +2
Query: 278 MAGKVMPETEEQN-RIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWRE 454
M + MP + + R RF +ELEF+QCLANP YIH+LAQ Y +++ F+ YLKYL+YW+
Sbjct: 1 MEPEAMPAPDPNDARQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLKYWQR 60
Query: 455 PEYARYLKYPMCLHFLELLQHEAFR 529
PEY +Y+ YP CL FLELLQ+ FR
Sbjct: 61 PEYIKYIMYPHCLFFLELLQNANFR 85
>07_01_0461 +
3492302-3492413,3492868-3492964,3493053-3493131,
3493484-3493794,3494219-3494231
Length = 203
Score = 109 bits (262), Expect = 1e-24
Identities = 45/78 (57%), Positives = 57/78 (73%)
Frame = +2
Query: 296 PETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREPEYARYL 475
P R RF +ELEF+QCLANP YIH+LAQ Y +++ F+ YLKYL+YW+ PEY +Y+
Sbjct: 10 PPDPNDARQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLKYWQRPEYIKYI 69
Query: 476 KYPMCLHFLELLQHEAFR 529
YP CL FLELLQ+ FR
Sbjct: 70 MYPHCLFFLELLQNANFR 87
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 30.7 bits (66), Expect = 0.79
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 392 AVPKSECNLDLLSTAQIQVPLEILFDSALQFLAL 291
A P S C+ L +TA PL LFD A F+A+
Sbjct: 98 ATPASACSFRLRATAARDSPLPSLFDEAFPFVAV 131
>01_05_0471 +
22535477-22535609,22535714-22535808,22535929-22536050,
22536165-22536702,22536774-22538105
Length = 739
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 278 MAGKVMPETEEQNRIRFQVELEFVQCLANPNYIHFL 385
+A KV+ +Q R +FQ E+E + C+ +PN + L
Sbjct: 456 VAIKVLRPDAQQGRKQFQQEVEVLSCIRHPNMVLLL 491
>06_01_0641 -
4652380-4653771,4653850-4654521,4654536-4654707,
4655515-4655690
Length = 803
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 278 MAGKVMPETEEQNRIRFQVELEFVQCLANPNYIHFL 385
+A KV+ Q R +FQ E+E + C+ +PN + L
Sbjct: 500 VAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLL 535
>02_02_0081 -
6608901-6609680,6610380-6610808,6610893-6610994,
6611114-6611429,6611624-6611806,6611909-6612030,
6612181-6612251,6612732-6612921
Length = 730
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 278 MAGKVMPETEEQNRIRFQVELEFVQCLANPNYIHFL 385
+A K++ Q R +FQ E+E + C+ +PN + L
Sbjct: 452 VAIKILRPDASQGRKQFQQEIEVLSCMRHPNMVLLL 487
>01_01_0492 -
3632812-3633189,3633563-3633709,3633906-3633995,
3634278-3634331,3636434-3636598,3637252-3637488,
3637610-3637696,3637846-3638022
Length = 444
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 211 WCTSQQIYDQNNNIFSGYTRQFILSLYKYVIFKILSLLKC 92
W S ++Y NN F Y + Y+Y+ F IL L C
Sbjct: 221 WQVSPELYGDNNPRFFTYWTFTLSFSYRYLDFDILPLKTC 260
>04_04_0442 - 25229186-25229568,25229740-25232671
Length = 1104
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -1
Query: 223 QVGQWCTSQQIYDQNNNIFSGYTRQFILSLYKYVIFKILS 104
Q+G C S Q D NN F+ Q I +L K V+F I S
Sbjct: 502 QIGN-CKSLQRLDLTNNYFTSELPQEIGNLSKLVVFNISS 540
>02_01_0395 +
2869748-2870045,2870450-2870571,2871700-2871777,
2871886-2872470,2872917-2873657,2873794-2873868
Length = 632
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 275 MMAGKVMPETEEQNRIRFQVELEFVQCLANPNYIHFL 385
++A K++ Q +FQ E+E + + +PN +H L
Sbjct: 341 LVAAKILHSNITQGLKQFQQEVELLNNIRHPNMVHLL 377
>01_07_0050 -
40751994-40752086,40752193-40752300,40752501-40752667,
40752756-40752882,40752984-40753145,40753674-40753837,
40753931-40754024,40754160-40754284,40754387-40754532,
40754676-40754764,40755524-40755589,40755990-40756148
Length = 499
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -2
Query: 540 THSLLNASCCNNSKKCKHMGYFKYLAYSGSLQYC 439
T S C + KC ++ F YL ++ + +YC
Sbjct: 98 TDSNKTLHCTTKTSKCLNLASFNYLGFAAADEYC 131
>01_01_0450 -
3344203-3344259,3344339-3344506,3344743-3344956,
3345039-3345101,3345582-3345769,3345846-3346029,
3346535-3346606,3346676-3346787,3346878-3346953,
3347050-3347100,3347179-3347260,3347331-3347567,
3347650-3347772,3348141-3348326,3348680-3349625,
3350426-3350551,3350683-3350811,3350918-3351049,
3351167-3351301,3351450-3351575,3352080-3352148,
3352149-3352205,3352302-3352436,3352600-3352704,
3352841-3352906,3353333-3353503,3353806-3353983
Length = 1395
Score = 27.9 bits (59), Expect = 5.6
Identities = 8/23 (34%), Positives = 19/23 (82%)
Frame = -1
Query: 157 TRQFILSLYKYVIFKILSLLKCY 89
T++++ + YK++++K+ SL +CY
Sbjct: 852 TKEWVSNHYKWIVWKLASLERCY 874
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 302 TEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLK 433
T+ QN ++ V+ + QC A +YI L Q L+ +F+ +L+
Sbjct: 297 TQLQNHLQGSVKRQGTQCPAINDYILILHQASNLQSASFLFFLR 340
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,268,471
Number of Sequences: 37544
Number of extensions: 243565
Number of successful extensions: 570
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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