Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0279
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)                    41   8e-04
SB_53940| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.61 
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   1.9  
SB_45117| Best HMM Match : Band_41 (HMM E-Value=7.4e-26)               29   3.3  
SB_46587| Best HMM Match : rve (HMM E-Value=1e-04)                     28   4.3  
SB_39015| Best HMM Match : Lectin_C (HMM E-Value=3.2e-28)              28   4.3  
SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05)                    28   4.3  
SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)                     28   4.3  
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)                     28   4.3  
SB_35881| Best HMM Match : DUF718 (HMM E-Value=1.6)                    28   5.7  
SB_8107| Best HMM Match : LAGLIDADG_1 (HMM E-Value=4)                  27   7.6  
SB_57521| Best HMM Match : rve (HMM E-Value=0.13)                      27   7.6  

>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
          Length = 483

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +2

Query: 299 ETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREP---EYAR 469
           + E   ++    +LE +Q L +P  +  L Q  +L++  +   L+Y Q    P   EY +
Sbjct: 177 QLEYPQQLEHPQQLEHLQQLEHPRQLEHLQQLKHLQQLEYPQQLEYPQQLEHPQQLEYLQ 236

Query: 470 YLKYPMCLHFLELLQH 517
            L+YP  L +L+ L+H
Sbjct: 237 QLEYPQQLEYLQQLEH 252



 Score = 35.5 bits (78), Expect = 0.029
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +2

Query: 299 ETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREP---EYAR 469
           + E   +++   +LE+ Q L  P  +    Q  YL++  +   L+YLQ    P   E+ +
Sbjct: 201 QLEHLQQLKHLQQLEYPQQLEYPQQLEHPQQLEYLQQLEYPQQLEYLQQLEHPQQLEHLQ 260

Query: 470 YLKYPMCLHFLELLQH 517
            L++   L +L+ L+H
Sbjct: 261 QLEHQQQLEYLQQLEH 276



 Score = 35.1 bits (77), Expect = 0.038
 Identities = 19/76 (25%), Positives = 40/76 (52%)
 Frame = +2

Query: 293 MPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREPEYARY 472
           + + E   ++    +L+ +Q L  P  + +  Q   L+    + YL+ L+Y ++ EY + 
Sbjct: 193 LQQLEHPRQLEHLQQLKHLQQLEYPQQLEYPQQ---LEHPQQLEYLQQLEYPQQLEYLQQ 249

Query: 473 LKYPMCLHFLELLQHE 520
           L++P  L  L+ L+H+
Sbjct: 250 LEHPQQLEHLQQLEHQ 265



 Score = 31.9 bits (69), Expect = 0.35
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = +2

Query: 314 NRIRFQVELEFVQCLANPNYIHFLAQRGYL---KEQTFVNYLKYLQYWREPEYARYLKYP 484
           N  R+  +L+  Q L +P  + +L Q+  L   K    + YL+ +QY ++ E+ + L++ 
Sbjct: 104 NNWRYLQQLKCPQQLEHPQQLGYLQQQENLQPLKHHQQLKYLQRVQYLQQLEHLQQLEHL 163

Query: 485 MCLHFLELLQH 517
             L  L+ L+H
Sbjct: 164 QQLKHLQQLEH 174



 Score = 31.5 bits (68), Expect = 0.46
 Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
 Frame = +2

Query: 287 KVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTF---VNYLKYLQYWREP 457
           K + + E   ++ +  +LE  Q L     + +  Q  YL++      + +L+ L++ ++ 
Sbjct: 209 KHLQQLEYPQQLEYPQQLEHPQQLEYLQQLEYPQQLEYLQQLEHPQQLEHLQQLEHQQQL 268

Query: 458 EYARYLKYPMCLHFLELLQH 517
           EY + L++P  L  L+ L+H
Sbjct: 269 EYLQQLEHPQQLEHLQQLKH 288



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
 Frame = +2

Query: 287 KVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQ---YWREP 457
           K   + E   ++ +  + E +Q L +   + +L +  YL++   +  L++LQ   + ++ 
Sbjct: 113 KCPQQLEHPQQLGYLQQQENLQPLKHHQQLKYLQRVQYLQQLEHLQQLEHLQQLKHLQQL 172

Query: 458 EYARYLKYPMCLHFLELLQH 517
           E+ + L+YP  L   + L+H
Sbjct: 173 EHPQQLEYPQQLEHPQQLEH 192


>SB_53940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 481 ILQISSIFWLSPILQI--FKIVYKSLFFKITSLCQKVNVIWI 362
           +L+   +FW+S       F  +Y SLF  +T+LC    V WI
Sbjct: 33  LLKAKHLFWISVAQDFRPFLTLYLSLFLHLTNLCVVCKVSWI 74


>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +2

Query: 257 IYFGFKMMAGKVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQ 391
           IY+G KM    V+P   E+N   F +E      +   N    L Q
Sbjct: 651 IYYGDKMETSAVLPAGREENDFNFDIEATVSDSMGAANQTTLLVQ 695


>SB_45117| Best HMM Match : Band_41 (HMM E-Value=7.4e-26)
          Length = 458

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 259 YAAGVFKLFKIKQV-GQWCTSQQIYDQNNNIFSGYTRQFILSL 134
           Y  GVF     K+V       Q+++DQ+ N+  GYTR  + S+
Sbjct: 348 YFHGVFGHTSAKRVLKDLIAHQRLFDQSENLVGGYTRPRLFSI 390


>SB_46587| Best HMM Match : rve (HMM E-Value=1e-04)
          Length = 436

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 211 WCTSQQIYDQNNNIFSGYTRQFILSLYKYVIFKI 110
           WC   ++  QN  I+ G       S+YK +++KI
Sbjct: 118 WCYRDELSVQNGIIYEGIQIMITQSMYKTMLYKI 151


>SB_39015| Best HMM Match : Lectin_C (HMM E-Value=3.2e-28)
          Length = 856

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 281 AGKVMPETEEQNRIRFQVELEFVQCLANPNYI-HFLAQRGYLKEQTFVNYLKYLQYWREP 457
           A +V  ET E+N    +++LE+    +N NY+  F+ +  + KE     Y     +WR  
Sbjct: 233 AVRVKHETNEKNGTSSKMDLEYSDFYSN-NYVKKFVMENPHKKEDKKYAYRSCPTFWRRY 291

Query: 458 E 460
           E
Sbjct: 292 E 292


>SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05)
          Length = 282

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 9/30 (30%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
 Frame = -1

Query: 448 PILQIFKIVYKSLFF--KITSLCQKVNVIW 365
           P +Q ++  YK+L +  ++ S+C+++N++W
Sbjct: 30  PPIQHYEACYKALNYYRRVFSICERLNIVW 59


>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 408

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +2

Query: 368 NYIHFLAQRGYLKEQTFV---NYLKYLQYWREPEYARYLKYPMCLHFLELLQHEAFR 529
           N + +   + YL   ++    +YL  L YW    Y   L Y +   FL +L +  F+
Sbjct: 35  NALSYWPYKSYLNALSYCPYKSYLNVLSYWLYKSYLNVLSYWLYKSFLNVLSYWLFK 91


>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 392

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +2

Query: 368 NYIHFLAQRGYLKEQTFV---NYLKYLQYWREPEYARYLKYPMCLHFLELLQHEAFR 529
           N + +   + YL   ++    +YL  L YW    Y   L Y +   FL +L +  F+
Sbjct: 19  NALSYWPYKSYLNALSYCPYKSYLNVLSYWLYKSYLNVLSYWLYKSFLNVLSYWLFK 75


>SB_35881| Best HMM Match : DUF718 (HMM E-Value=1.6)
          Length = 250

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +2

Query: 287 KVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRG---YLKEQTFVNYLKYLQYWREP 457
           +V    +E    ++  E +  Q L  P    +L +R    YLKE+    YLK      E 
Sbjct: 156 QVFQYLKEHQVFQYLKEHQVFQYLTEPQVFQYLRERQVFQYLKERQVFQYLK------EH 209

Query: 458 EYARYLKYPMCLHFLELLQHEAFRRE 535
           +  +YLK      +L+  Q   +R+E
Sbjct: 210 QVFQYLKEHQVFQYLKERQVFQYRKE 235


>SB_8107| Best HMM Match : LAGLIDADG_1 (HMM E-Value=4)
          Length = 136

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 416 FVNYLKYLQYWREPEYARYLKYPMCLHFLEL 508
           F+  + Y++ W EP  A  ++ P  +H+L L
Sbjct: 95  FMKSVPYMKSWFEPNLAASIRGPRRIHYLNL 125


>SB_57521| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 1105

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 211 WCTSQQIYDQNNNIFSGYTRQFILSLYKYVIFKI 110
           WC   ++  QN  I+ G       S+YK +++KI
Sbjct: 715 WCYRDELSVQNGIIYKGIQVMIPQSMYKTMLYKI 748


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,059,413
Number of Sequences: 59808
Number of extensions: 298855
Number of successful extensions: 626
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)