Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0278
         (411 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    22   2.0  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   6.2  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   6.2  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    20   8.2  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    20   8.2  

>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor
          subunit protein.
          Length = 141

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 52 PNSVDKTNETAIPQ 93
          PNSV  +NE ++PQ
Sbjct: 21 PNSVGVSNEVSLPQ 34


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 350 PRDPVDGLQQY 382
           PRD VD LQQ+
Sbjct: 647 PRDGVDTLQQF 657


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 368 GLQQYCFSEHHFH 406
           G+  Y  S+HH H
Sbjct: 44  GMSPYASSQHHHH 56


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 138 LAPSNTKL*CMNVIRFSYLHIAGLYGLYLC 227
           +A S T    +N+I    L I  LY L LC
Sbjct: 187 IASSKTLKLSINIISLVQLWIFQLYLLILC 216


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 52  PNSVDKTNETAIPQ 93
           PNSV  ++E ++PQ
Sbjct: 203 PNSVGVSSEVSLPQ 216


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,568
Number of Sequences: 336
Number of extensions: 1814
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8963165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)