Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0278
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    58   7e-10
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    27   1.1  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   3.5  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   4.6  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   4.6  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 57.6 bits (133), Expect = 7e-10
 Identities = 28/73 (38%), Positives = 39/73 (53%)
 Frame = +3

Query: 192 LHIAGLYGLYLCFTSAKLATSVLAIVLFFLGNFGITAGAHRLWSHNGYKVKLALEILLMV 371
           L +  +YG++   T  +  T + AI+ +     GITAG HRLWSH  YK K  LE  L  
Sbjct: 73  LPMIAIYGVFT--TPLQTKTLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFLAA 130

Query: 372 FNSIAFQNTIFTW 410
             + AF+ +I  W
Sbjct: 131 GGAAAFEGSIRWW 143


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -2

Query: 404 ENGVLKSNTVEDHQQDLEGQFDFVT 330
           EN + +SNTVE+  +++E QF+ V+
Sbjct: 304 ENYLSRSNTVENEPENIEKQFESVS 328


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 292 PKFPRKNNTIAKTDVANFAEVK 227
           P FP +N T  + +VANF  +K
Sbjct: 205 PAFPDENITALQKNVANFTSIK 226


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 132 PGLAPSNTKL*CMNVIRFSYLHIAGLYGLYLCFTSAKLATSVLAIVLFF 278
           PG+A S   +     +   Y    G Y +Y C  +  +  +  A++LFF
Sbjct: 141 PGIACSADMILNFTTLMTIYFASCGSYAIYACCMALTVFINPNALLLFF 189


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 114 EKLIAPPGLAPSNTKL*CMNVIRFSYLHIAGLY 212
           E+L     L   NTK+ C+ ++ FSY  I+ L+
Sbjct: 873 EELDGHKKLVNPNTKVFCLYLVSFSYSIISNLF 905


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,651
Number of Sequences: 5004
Number of extensions: 30896
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)