Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0278
         (411 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0016 - 10623796-10625317,10626493-10627541                       27   5.8  
02_04_0326 - 22058648-22058659,22058660-22058812,22059412-22059654     27   7.7  

>06_02_0016 - 10623796-10625317,10626493-10627541
          Length = 856

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +3

Query: 258 LAIVLFFLGNFGI-TAGAHRLWSHNGYKVKLALEIL--LMVFNSIAFQN 395
           + IV+  LG  G   AG+ R W  +GY + LA+ +L  +M+   + + N
Sbjct: 787 MVIVVDLLGLLGAYAAGSCRDWETSGYVIALAVVVLACIMIHFMLLYHN 835


>02_04_0326 - 22058648-22058659,22058660-22058812,22059412-22059654
          Length = 135

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 231 TSAKLATSVLAIVLFFLGNFGITAGAHRLWSHNGYKVKLALEILLMVF 374
           +S + A  V  IV+  + +FGI  G+     H+G +V   +  +LMVF
Sbjct: 84  SSQRNAAVVGNIVIVLVNSFGIL-GSDFTTKHHGREVTFTVSAILMVF 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,263,354
Number of Sequences: 37544
Number of extensions: 188381
Number of successful extensions: 340
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)