Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0278
         (411 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)               56   1e-08
SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)              30   0.65 
SB_19956| Best HMM Match : Vps55 (HMM E-Value=0.65)                    29   1.5  
SB_4353| Best HMM Match : Vps55 (HMM E-Value=0.65)                     29   1.5  
SB_50958| Best HMM Match : Hc1 (HMM E-Value=3.7)                       28   3.4  
SB_46099| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-23)                 27   7.9  
SB_39878| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_21497| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 21/41 (51%), Positives = 30/41 (73%)
 Frame = +3

Query: 288 FGITAGAHRLWSHNGYKVKLALEILLMVFNSIAFQNTIFTW 410
           +G+T GAHRLW+H  +K K  L +++M+ NS+A QN IF W
Sbjct: 18  YGVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQNDIFEW 58


>SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)
          Length = 618

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 165 CMNVIRFSYLHIAGLYGLYLCFTSAKLATSVLAI 266
           CMN  +F YL++ G+ GL+  F +A ++  V  +
Sbjct: 283 CMNGKKFKYLYVTGVAGLFWGFLAAAVSCCVFYV 316


>SB_19956| Best HMM Match : Vps55 (HMM E-Value=0.65)
          Length = 402

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 165 CMNVIRFSYLHIAGLYGLYLCFTSAKLATSVLAIVLF 275
           CMN   F YL++ G+ GL+  F    LAT+V   V +
Sbjct: 125 CMNGTEFKYLYVTGVAGLFWGF----LATAVSCCVFY 157


>SB_4353| Best HMM Match : Vps55 (HMM E-Value=0.65)
          Length = 336

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 165 CMNVIRFSYLHIAGLYGLYLCFTSAKLATSVLAIVLF 275
           CMN   F YL++ G+ GL+  F    LAT+V   V +
Sbjct: 125 CMNGTEFKYLYVTGVAGLFWGF----LATAVSCCVFY 157


>SB_50958| Best HMM Match : Hc1 (HMM E-Value=3.7)
          Length = 363

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3

Query: 105 VDYEKLIAPPGLAP 146
           VDYE+L APPG AP
Sbjct: 69  VDYEELPAPPGFAP 82


>SB_46099| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-23)
          Length = 343

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +2

Query: 188 LFTYCWSIWTLSLF--HLSKIG 247
           +F +CW  W +S+F  ++ KIG
Sbjct: 245 IFAFCWITWYISIFGLYVEKIG 266


>SB_39878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1052

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 150 LMGRGLGVQ*VFHNQHDYPLRYCC 79
           L G+GLGV+ +F N  +  L  CC
Sbjct: 118 LSGKGLGVEGIFPNLINQMLHVCC 141


>SB_21497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 81  SNTSRDNHVDYEKLIAPPGLAPSNT 155
           S+T R+N+ DY   + PP + P +T
Sbjct: 99  SSTVRENYFDYGSDVDPPSMRPVST 123


>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 81  SNTSRDNHVDYEKLIAPPGLAPSNT 155
           S+T R+N+ DY   + PP + P +T
Sbjct: 654 SSTVRENYFDYGSDVDPPSMRPVST 678


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,011,366
Number of Sequences: 59808
Number of extensions: 223541
Number of successful extensions: 378
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)