Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0278
         (411 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   2.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   2.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   4.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   4.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   9.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   9.5  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -2

Query: 383 NTVEDHQQDLEGQFDFVTIMRPQTMSSSCNTKVP 282
           N V  HQ   E + +FV I  P+ +     T  P
Sbjct: 178 NDVVQHQSGSEAEAEFVCIATPEAIELHFTTDHP 211


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 52  PNSVDKTNETAIPQ 93
           PNSV  +NE ++PQ
Sbjct: 174 PNSVGVSNEVSLPQ 187


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 52  PNSVDKTNETAIPQ 93
           PNSV  +NE ++PQ
Sbjct: 113 PNSVGVSNEVSLPQ 126


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +1

Query: 73  NETAIPQGIIMLIMKNSLHPQASPHQTQNCS 165
           ++T +    + L++  ++  ++ PH TQ CS
Sbjct: 117 DKTLLYMSKLTLVLSCAMKFESYPHDTQICS 147


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 213 GLYLCFTSAKLATSVLAIVLFFLGNFGITAG-AHRLWSHNGYKVKLALEIL-LMVFNSIA 386
           G+Y  F       S+LAI ++++    I+   AH   +  G +V L  + +   V N++ 
Sbjct: 167 GVYFAFRDQGACISILAIKVYYISCPEISVNFAHFPATPTGREVALIEQTIGTCVANAVV 226

Query: 387 FQNTIF 404
            +   F
Sbjct: 227 IEQPTF 232


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 164 LQFCV*WGEAWG 129
           L++ V WGE WG
Sbjct: 283 LKWLVNWGEQWG 294


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 121 SLHPQASPH 147
           S HPQA PH
Sbjct: 355 STHPQAGPH 363


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 121 SLHPQASPH 147
           S HPQA PH
Sbjct: 355 STHPQAGPH 363


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 99  NHVDYEKLIAPP 134
           +HVD+++ + PP
Sbjct: 312 DHVDFDEFLPPP 323


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 285 NFGITAGAHRLWSHNGYKVKLALEILL 365
           N+GI+AG +R          LAL I L
Sbjct: 383 NYGISAGLNRTAGQQAAYQLLALVITL 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,296
Number of Sequences: 438
Number of extensions: 2214
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)