Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0275
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    28   1.0  
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.1  
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          25   9.4  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    25   9.4  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -1

Query: 329 FDTIVIIKIDYLFHSIIHSHRSCLI*IHVLVNIRSLSF 216
           FDT+ ++ + ++   +I+SH   ++ +  L N+ +L+F
Sbjct: 399 FDTLTVLLLTWINPYVINSHTGLILALFYLTNLIALAF 436


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 90  SI*SLLCSDMLTQSTGRQMRLSTVW*SFDICIQLE 194
           S+ SLL S + +  + RQ+  S  W    +C++LE
Sbjct: 273 SVLSLLTSTLHSLESARQIADSNTWKPIIVCLELE 307


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 177 YQMITIQ*ITSSAYLWTESTYHYTTNSKLTSSKYQPSC 64
           +++ TI   TS+  + TES+Y  +++ +   S    SC
Sbjct: 233 FEVPTIHVFTSTTQVHTESSYETSSSEQSDDSSSSSSC 270


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 383 RQFQRDYIEIKKSVKNLPFDTIV 315
           RQFQRD + I+ +V  LP   I+
Sbjct: 87  RQFQRDMLRIESTVIVLPTSNIL 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,670
Number of Sequences: 5004
Number of extensions: 37451
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)