Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0275
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50778| Best HMM Match : PA14 (HMM E-Value=0.00025)                  37   0.012
SB_29722| Best HMM Match : HLH (HMM E-Value=4.9e-14)                   29   1.8  
SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.3  
SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)                      27   9.6  

>SB_50778| Best HMM Match : PA14 (HMM E-Value=0.00025)
          Length = 1266

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 22/79 (27%), Positives = 38/79 (48%)
 Frame = -1

Query: 443 QYDITVID*STDALQEGHL*RQFQRDYIEIKKSVKNLPFDTIVIIKIDYLFHSIIHSHRS 264
           +YDITV+       QE HL  QF R  I  +K V +  ++  + + + ++FH  + S R 
Sbjct: 181 RYDITVVIYVITRSQERHLDNQFCRHGISNEKMVTDRDYNRAISLVVQHVFHGEMESFRL 240

Query: 263 CLI*IHVLVNIRSLSFRIN 207
             +   V  +   + FR +
Sbjct: 241 YFVSFEVSASRTHVIFRFS 259


>SB_29722| Best HMM Match : HLH (HMM E-Value=4.9e-14)
          Length = 106

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
 Frame = -1

Query: 416 STDALQEGHL*RQFQRDYIEIKKSVKNLPFDT------IVIIKIDYLFH 288
           S +A++E    +  ++ Y+E++K++ N+P DT      I+++ IDY+ H
Sbjct: 29  SANAIRERIRAQNLKKAYMELQKTLPNVPPDTKLPRLNILLLAIDYISH 77


>SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1415

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +3

Query: 123 TQSTGRQMRLSTV-W*SFD-ICIQLEYARCIDSKGQRPNVN 239
           T+   R +RL+ + W SF  +C+++E   C+ ++G  P+V+
Sbjct: 174 TRIFARFIRLNPIQWNSFGYVCMRIEIYECLPTRGSVPDVS 214


>SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)
          Length = 766

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 201 ARILIEYRYQMITIQ*ITSSAYLWTESTYHYTTNSKLTSSKYQPSCQCQ 55
           AR++ E +   IT    T   + W+E  Y+YTT ++L     + S + Q
Sbjct: 265 ARLVREDQRSSIT----TQHLHAWSEKKYYYTTPARLVREDQRSSIKTQ 309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,946,742
Number of Sequences: 59808
Number of extensions: 262595
Number of successful extensions: 432
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)