Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0275
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    29   2.8  
AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ...    27   8.5  

>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
           protein Y51A2D.15 protein.
          Length = 1222

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 171 FDICIQLEYARCIDSKGQRPNVNQNVYSYQTRPMRMND 284
           FD  IQ E A CI    +   + QN+  ++ R M+  D
Sbjct: 134 FDQTIQAELAACIQKLTESDEIVQNLEDFERRKMKETD 171


>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
           protein K02F6.4 protein.
          Length = 1193

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
 Frame = +3

Query: 189 LEYARCIDSKGQRP-NVN--------QNVYSYQTRPMRMND*MKKIIDFN 311
           LE   CID  GQ   NVN        QN+ S+ T   +    +KKI++ N
Sbjct: 391 LEVGECIDKLGQMTANVNFETFQKTIQNLKSFDTSASKTRSLLKKIVELN 440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,701,400
Number of Sequences: 27780
Number of extensions: 201426
Number of successful extensions: 399
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)