Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0274
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    28   1.1  
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    25   5.7  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   5.7  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.5  
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    25   10.0 

>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 264 NNTF-ILTSRVEKYPIPYGKNSWC*TFDC 181
           N+ F IL   +E+ P+PY  N+W  T  C
Sbjct: 320 NSLFRILDMEIERQPMPYPYNTWISTIRC 348


>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +1

Query: 7   NSARGKSRGSSHVSKKQASVVAPHAFRWSEENRGRNTSKQV*SLATEASAGHP-SHAAST 183
           NSA     GSS   K+Q+S  A        +NR  N +  + + +   S G   S  A+ 
Sbjct: 229 NSASTNEEGSSRRRKEQSSSAAAKNISEDAQNRMTNATASIMAGSALPSGGKKYSWMATD 288

Query: 184 IESSTPRV 207
           +   TP V
Sbjct: 289 MTPMTPAV 296


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 378 FLSIRLQRYTYIVMYTSWHIFVRLQKARVLTKWH 277
           FL+   QR   + +Y+SW I + L  AR+    H
Sbjct: 259 FLNSFNQRRNSLQLYSSWFIILILSDARIKENTH 292


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 142 TEASAGHPSHAASTIESSTPRVLSVR 219
           T  SAGHPS ++ST+ +     L+ R
Sbjct: 31  TSTSAGHPSSSSSTLPNYAASSLNSR 56


>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 87  PERVRCNNGSLLFGHMGGTS 28
           PERV  N G +  GH  G+S
Sbjct: 337 PERVNINGGGVAMGHPLGSS 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,962
Number of Sequences: 5004
Number of extensions: 43831
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)