Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0274
(557 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0130 - 12609417-12610462,12610786-12611040,12611139-126112... 30 1.1
07_01_0239 + 1744353-1746365 29 2.5
03_05_0835 - 28065505-28065656,28066547-28066604,28067535-280676... 29 2.5
01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232 29 3.3
08_02_0592 + 19064025-19066596,19067036-19067084,19068530-190686... 28 5.8
12_02_1075 - 25854662-25855015,25855895-25856045,25856141-258563... 27 7.7
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 27 7.7
04_01_0078 - 879016-881288,884676-885141 27 7.7
03_06_0637 - 35219212-35219754,35220405-35220587 27 7.7
03_03_0150 + 14872035-14872472,14874895-14875725 27 7.7
>09_03_0130 -
12609417-12610462,12610786-12611040,12611139-12611253,
12611376-12611428,12611854-12612114,12612252-12612302,
12612412-12612660,12612779-12613007,12613292-12613666
Length = 877
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +2
Query: 2 AGIRHEAKAEVPPMCPKSKLP----LLHLTRSGGQKKIEGA-TPQSKSNPW 139
+GI+ E PP P P LL TRSGG + ++G+ S+S PW
Sbjct: 6 SGIQEEPAPPPPPPPPPPPPPPLRRLLTATRSGGSRWVDGSEVGSSESAPW 56
>07_01_0239 + 1744353-1746365
Length = 670
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -2
Query: 433 LSPYHNLPKTDANRVTPKFSLDSSSTIYV--HSYVYIVAYFC 314
LS HNL K + + FS SS+ +Y+ H++ + +A FC
Sbjct: 206 LSATHNLSKLLLDHMYVGFSSSSSAALYISGHAHGHFIAGFC 247
>03_05_0835 -
28065505-28065656,28066547-28066604,28067535-28067642,
28067796-28067855,28067940-28068015,28068470-28068627,
28068787-28068849,28069003-28069142,28070793-28071882
Length = 634
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 17 EAKAEVPPMCPKSKLPLLHLTRSGGQKKIEGATPQSKSNP 136
+A V + P + LPLL R GG+ I GA P S P
Sbjct: 198 KAAPAVAAVAPLAGLPLLSPKRGGGEVGIRGARPPVLSPP 237
>01_01_0400 + 3038298-3038863,3039057-3039411,3039504-3040232
Length = 549
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 17 EAKAEVPPMCPKSKLPLLHLTRSGGQKKIEGATPQSKS 130
+ K +P C S++ L HL KIE ATP+ +S
Sbjct: 322 DKKRGIPSDCSDSQIMLWHLDMPRHTPKIEQATPEKES 359
>08_02_0592 +
19064025-19066596,19067036-19067084,19068530-19068605,
19068767-19068922
Length = 950
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 292 NTGFLESYKNMPRCIHNYVRISLKTNREKTSASLDLRQFSVNCGMVISFIKD-CCNYRNV 468
+ G LE Y N+P C+ + + + +++ + R+F C ++ ++ R +
Sbjct: 672 HNGKLELYLNVPSCVERHRQHGSENGNDRSKIRMLCRRFQFICNALLHAVEQGSLMVRRI 731
Query: 469 NLSMTIVIDK 498
+L +I K
Sbjct: 732 DLEADKIIRK 741
>12_02_1075 -
25854662-25855015,25855895-25856045,25856141-25856378,
25856494-25856704,25856973-25857088,25857844-25857877,
25857996-25858253
Length = 453
Score = 27.5 bits (58), Expect = 7.7
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +1
Query: 169 HAASTIESSTPRVLSVRNRVFFYSRR*NKSIVINGSMPFCQNTGFLESY--KNMPRCIHN 342
H S+ SS+PRVL V YS R S + G + Q F+E++ K+ P I N
Sbjct: 46 HTLSSSFSSSPRVLCWVLAVLGYSYRLQASSLSAGELTDLQGKFFMETFFRKDTP-IIRN 104
Query: 343 YVRISLKTNREKT 381
S K R+ T
Sbjct: 105 VKIYSSKELRKAT 117
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 409 KTDANRVTPKFSLDSSSTIYVHSYVYIVAYFCT 311
K + +R+T F+ + + YV S V +V+Y CT
Sbjct: 803 KENWDRITKTFAASAILSDYVKSIVTLVSYICT 835
>04_01_0078 - 879016-881288,884676-885141
Length = 912
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 111 QHLKASLILGY*SLRWTSLPRRLHN 185
+HL + LG+ S W SLP L N
Sbjct: 834 EHLTSLAYLGFTSCHWNSLPNNLEN 858
>03_06_0637 - 35219212-35219754,35220405-35220587
Length = 241
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 379 FSLDSSSTIYVHSYVYIVAYFCTTPKSP 296
FSLDS STI V + Y+C PK P
Sbjct: 43 FSLDSKSTIGVEFATRTIQYYC-FPKGP 69
>03_03_0150 + 14872035-14872472,14874895-14875725
Length = 422
Score = 27.5 bits (58), Expect = 7.7
Identities = 21/89 (23%), Positives = 44/89 (49%)
Frame = +1
Query: 82 FRWSEENRGRNTSKQV*SLATEASAGHPSHAASTIESSTPRVLSVRNRVFFYSRR*NKSI 261
FR + ++ R S + S AT A+A + + + + + R+LSV + ++ + S+
Sbjct: 20 FRSNSDHLMRLHSTWINSAATPAAAPYSRESLAMLAA---RLLSVSDDHLQRQQQQHVSM 76
Query: 262 VINGSMPFCQNTGFLESYKNMPRCIHNYV 348
+I+ S+P C G ++K + + V
Sbjct: 77 IISTSLPGCTTGGVAPAFKEAIEALRDVV 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,029,198
Number of Sequences: 37544
Number of extensions: 255516
Number of successful extensions: 668
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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