Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0274
         (557 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF230404-1|AAG50183.1|  854|Homo sapiens tripartite motif protei...    30   6.3  
AF265575-1|AAF77052.1|  231|Homo sapiens ubiquitous TPR-motif pr...    29   8.4  
AF000996-1|AAC51843.1| 1079|Homo sapiens ubiquitous TPR motif, Y...    29   8.4  
AF000995-1|AAC51842.1| 1240|Homo sapiens ubiquitous TPR motif, Y...    29   8.4  
AF000994-1|AAC51841.1| 1347|Homo sapiens ubiquitous TPR motif, Y...    29   8.4  

>AF230404-1|AAG50183.1|  854|Homo sapiens tripartite motif protein
           TRIM19 delta protein.
          Length = 854

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +1

Query: 4   RNSARGKSR---GSSHVSKKQASVVAPHAFRWSEENRGRN 114
           R + R +SR   GSSH+S+ Q  +  PH  R +  +R R+
Sbjct: 721 RGAVRSRSRSLRGSSHLSQWQRGISPPHRIRGAVRSRSRS 760


>AF265575-1|AAF77052.1|  231|Homo sapiens ubiquitous TPR-motif
           protein Y isoform protein.
          Length = 231

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 430 SPYHNLPKTDANRVTPKFSLDSSSTIYVHSYVYIVAYFCTTPKSP 296
           SPY  LPK   N  TP   L++    +       +  FCT PK+P
Sbjct: 25  SPYPPLPKDKLNPPTPSIYLENKRDAFFPP----LHQFCTNPKNP 65


>AF000996-1|AAC51843.1| 1079|Homo sapiens ubiquitous TPR motif, Y
           isoform protein.
          Length = 1079

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 430 SPYHNLPKTDANRVTPKFSLDSSSTIYVHSYVYIVAYFCTTPKSP 296
           SPY  LPK   N  TP   L++    +       +  FCT PK+P
Sbjct: 873 SPYPPLPKDKLNPPTPSIYLENKRDAFFPP----LHQFCTNPKNP 913


>AF000995-1|AAC51842.1| 1240|Homo sapiens ubiquitous TPR motif, Y
           isoform protein.
          Length = 1240

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 430 SPYHNLPKTDANRVTPKFSLDSSSTIYVHSYVYIVAYFCTTPKSP 296
           SPY  LPK   N  TP   L++    +       +  FCT PK+P
Sbjct: 873 SPYPPLPKDKLNPPTPSIYLENKRDAFFPP----LHQFCTNPKNP 913


>AF000994-1|AAC51841.1| 1347|Homo sapiens ubiquitous TPR motif, Y
           isoform protein.
          Length = 1347

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 430 SPYHNLPKTDANRVTPKFSLDSSSTIYVHSYVYIVAYFCTTPKSP 296
           SPY  LPK   N  TP   L++    +       +  FCT PK+P
Sbjct: 873 SPYPPLPKDKLNPPTPSIYLENKRDAFFPP----LHQFCTNPKNP 913


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,396,640
Number of Sequences: 237096
Number of extensions: 1422252
Number of successful extensions: 10907
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10902
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5590411794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)