Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0274
(557 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 30 1.2
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea... 29 2.8
At4g08470.1 68417.m01398 mitogen-activated protein kinase, putat... 29 2.8
At1g29940.1 68414.m03658 DNA-directed RNA polymerase family prot... 29 2.8
At3g48860.2 68416.m05337 expressed protein 28 3.7
At3g48860.1 68416.m05336 expressed protein 28 3.7
At1g01520.1 68414.m00068 myb family transcription factor similar... 28 3.7
At4g03370.1 68417.m00459 ubiquitin family protein contains INTER... 27 8.5
At1g34260.1 68414.m04252 phosphatidylinositol-4-phosphate 5-kina... 27 8.5
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +1
Query: 25 SRGSSHVSKKQASVVAPHAFRWSEENRGRNTSKQV*SLATEASAGHPSHAASTIESSTPR 204
S GSS S AS+ +FR S +NR +N Q+ L + S+ S A ES + R
Sbjct: 116 SSGSSVSSFSTASLAEAFSFRGSFQNRAKNIDDQI-LLTRDYSSNSSSIAEGLSESDSSR 174
>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
family protein contains similarity to photomorphogenesis
repressor protein; contains Pfam PF00400: WD domain,
G-beta repeat (5 copies)
Length = 243
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 211 SVRNRVFFYSRR*NKSIVINGSMPFCQNTG 300
S NRVF Y RR K + ++G P N+G
Sbjct: 175 SENNRVFVYDRRWGKPVWVDGFEPVGMNSG 204
>At4g08470.1 68417.m01398 mitogen-activated protein kinase, putative
similar to mitogen-activated protein kinase [Arabidopsis
thaliana] gi|1255448|dbj|BAA09057; contains Pfam
PF00069: Protein kinase domain
Length = 560
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 215 TERTRGVELSIVEAAWEGCPAEASVAKD*TCFEVLRPRFSS 93
TE TRG+ + + + A E CP + A + ++ P ++S
Sbjct: 88 TEETRGMFVQLGDTAHEACPFATNEADSSSTVSIISPSYAS 128
>At1g29940.1 68414.m03658 DNA-directed RNA polymerase family protein
similar to SP|P22138 DNA-directed RNA polymerase I 135
kDa polypeptide (EC 2.7.7.6) (RNA polymerase I subunit
2) {Saccharomyces cerevisiae}; contains Pfam profiles
PF04563; RNA polymerase beta subunit, PF04560: RNA
polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2
domain 2, PF04565: RNA polymerase Rpb2 domain 3,
PF00562: RNA polymerase Rpb2 domain 6
Length = 1114
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 316 KNMPRCIHNYVRISLKTNREKTSASLDLRQ 405
KN PR I + LKT KT + LDL+Q
Sbjct: 364 KNPPRSIGTSIETLLKTGALKTQSGLDLQQ 393
>At3g48860.2 68416.m05337 expressed protein
Length = 577
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 106 GRNTSKQV*SLATEASAGHPSHAA-STIESSTPRVL 210
GRN ++QV S ASAG PS +A ST + P ++
Sbjct: 134 GRNFAEQVPSSVRSASAGRPSMSARSTTPTPIPNLM 169
>At3g48860.1 68416.m05336 expressed protein
Length = 494
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 106 GRNTSKQV*SLATEASAGHPSHAA-STIESSTPRVL 210
GRN ++QV S ASAG PS +A ST + P ++
Sbjct: 134 GRNFAEQVPSSVRSASAGRPSMSARSTTPTPIPNLM 169
>At1g01520.1 68414.m00068 myb family transcription factor similar to
myb-related protein GI:2505876 from [Arabidopsis
thaliana]
Length = 287
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Frame = -2
Query: 412 PKTDAN----RVTPKFSLDSSSTIYVHSYVY 332
PK AN + PKF+L SS+ ++ H Y+Y
Sbjct: 123 PKRKANHPYPQKAPKFTLSSSNALFQHDYLY 153
>At4g03370.1 68417.m00459 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 295
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 62 PLLHLTRSGGQKKIEGATPQSKSNP 136
PLLHL+ S + PQS SNP
Sbjct: 65 PLLHLSISPDDNPTQNQVPQSPSNP 89
>At1g34260.1 68414.m04252 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1456
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 307 ESYKNMPRCIHNYVRISLKTNREKTSASLDLRQFS 411
ES K + RCIH ++ L N++ D+ +FS
Sbjct: 1118 ESKKPLSRCIHGSLQGFLDNNQDSKQTDRDVSRFS 1152
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,529,795
Number of Sequences: 28952
Number of extensions: 216738
Number of successful extensions: 528
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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