Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0273
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0429 + 8378819-8378921,8379098-8379282,8380054-8380120,838...    29   2.1  
09_03_0110 + 12432562-12432801,12432811-12433419                       28   3.6  
11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458     27   6.3  
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089...    27   8.3  
11_06_0412 - 23235670-23236512,23236804-23237838                       27   8.3  
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678...    27   8.3  
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833...    27   8.3  
02_02_0532 + 11227074-11227349,11227567-11227969,11228228-112285...    27   8.3  

>03_02_0429 +
           8378819-8378921,8379098-8379282,8380054-8380120,
           8380516-8380544,8380739-8380774
          Length = 139

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 34  VILCNRGTPGYFLAEVQVFPKSRCRMKSQKMVQ 132
           ++LCN  + GY L + +V+P+     K  ++VQ
Sbjct: 96  MVLCNSASQGYKLPQEEVWPQQSAEAKEGEVVQ 128


>09_03_0110 + 12432562-12432801,12432811-12433419
          Length = 282

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
 Frame = -1

Query: 193 RLPSIVDAFIIS--SIS-GTSPLAVPFSAISSDIVI 95
           R+PS+   ++++   IS G +PLA+P SA SS +VI
Sbjct: 124 RIPSVPTFYVVALTGISVGGAPLAIPPSAFSSGMVI 159


>11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458
          Length = 619

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 356 IVDQYGRVCRFEVGAEIWGRLLHVH 282
           ++ + G+ C +E+ AE+WG L+ VH
Sbjct: 531 LIKKEGQACLWEILAEVWGHLI-VH 554


>12_02_0957 +
           24807261-24807311,24807436-24807773,24808727-24808927,
           24809024-24809069,24809284-24809600,24809949-24810072,
           24810465-24810537,24810968-24811173,24811384-24811651,
           24811780-24811877,24812116-24812379
          Length = 661

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 147 PEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISL 269
           P+I L I A        G+ +FC++Y +  YLL + +TI L
Sbjct: 433 PQIPLYITAMDKTSVASGSLVFCKDYAV-RYLLDQNRTIKL 472


>11_06_0412 - 23235670-23236512,23236804-23237838
          Length = 625

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 356 IVDQYGRVCRFEVGAEIWGRLLHVH 282
           IV++    CR+E+ AE+W  L+ VH
Sbjct: 562 IVNEEDEACRWEILAEVWAHLI-VH 585


>09_06_0134 +
           21065104-21065965,21066732-21066961,21067618-21067841,
           21067929-21068781
          Length = 722

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = -1

Query: 343 MGGCVASKLVRKSGGGFCMSTVVTF---KLIVLSSANRYRSMKYS*QNRQAPFRLPSIVD 173
           MG C AS+L    GGG C   V      K ++ ++A+R  ++  +     A  R  S+ D
Sbjct: 1   MGNCAASRLAGGGGGGGCGDPVAVCRDRKRLIKAAADRRFALAGAHAAYAAALR--SVAD 58

Query: 172 AFIISSISGTSPLAV 128
           A  +     T+P  +
Sbjct: 59  AVDVFVARHTAPAPI 73


>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
            29283735-29283917,29284362-29284467,29284627-29284651,
            29284736-29284855,29284920-29284997,29285646-29285774,
            29285976-29285989,29286168-29287944,29288344-29288489,
            29288921-29291029
          Length = 1747

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -3

Query: 410  HGL-HDVPFDFLVLKYRQPIVDQYGRVCRFEVGAEIWGRL--LHVHCCH 273
            HG+ H + F    +  +  ++D YG+ C F+    I+  +  + + CC+
Sbjct: 1020 HGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCN 1068


>02_02_0532 +
           11227074-11227349,11227567-11227969,11228228-11228506,
           11228736-11228838,11228932-11229013,11229260-11229370,
           11229621-11229691,11229791-11229803
          Length = 445

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +2

Query: 305 RFPHQLRSDTPAHTDRQWAGDT*ERENRTAHHEVRARG 418
           RFPH+L S   A    QWA +  E E R A  + R RG
Sbjct: 62  RFPHRLGSGGYAPKVAQWAKE--EEEMRKAGLQGRVRG 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,835,469
Number of Sequences: 37544
Number of extensions: 321360
Number of successful extensions: 827
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)