Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0273
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.0  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   7.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 339 PILIDNGLAILENEKIERHIMKSVP 413
           PI +D+G+ IL++ K E   + S+P
Sbjct: 341 PIQLDDGIDILDDVKCEDERVISIP 365


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 4   QEFGTRRVACVILCNRGTPG 63
           QE G R  +  + C R  PG
Sbjct: 79  QESGEREASVSLFCPRAKPG 98


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 267 LKVTTVDMQKPPPDF 311
           L ++T  M +PPP+F
Sbjct: 370 LNLSTALMSQPPPNF 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,311
Number of Sequences: 438
Number of extensions: 3179
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)